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BioC 2.13: CHECK report for GraphAT on moscato1

This page was generated on 2014-04-05 09:49:06 -0700 (Sat, 05 Apr 2014).

Package 326/750HostnameOS / ArchBUILDCHECKBUILD BIN
GraphAT 1.34.0
Thomas LaFramboise
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/GraphAT
Last Changed Rev: 81642 / Revision: 88450
Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: GraphAT
Version: 1.34.0
Command: rm -rf GraphAT.buildbin-libdir && mkdir GraphAT.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GraphAT.buildbin-libdir GraphAT_1.34.0.tar.gz >GraphAT-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=GraphAT.buildbin-libdir --install="check:GraphAT-install.out" --force-multiarch --no-vignettes --timings GraphAT_1.34.0.tar.gz && mv GraphAT.buildbin-libdir/* GraphAT.Rcheck/ && rmdir GraphAT.buildbin-libdir
StartedAt: 2014-04-05 04:24:07 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 04:25:10 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 62.9 seconds
RetCode: 0
Status:  OK  
CheckDir: GraphAT.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/GraphAT.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GraphAT/DESCRIPTION' ... OK
* this is package 'GraphAT' version '1.34.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GraphAT' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'graph' 'methods'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: depthmat.Rd:28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [5s] OK
** running examples for arch 'x64' ... [7s] OK
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.13-bioc/meat/GraphAT.Rcheck/00check.log'
for details.

GraphAT.Rcheck/00install.out:


install for i386

* installing *source* package 'GraphAT' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'GraphAT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GraphAT' as GraphAT_1.34.0.zip
* DONE (GraphAT)

GraphAT.Rcheck/examples_i386/GraphAT-Ex.timings:

nameusersystemelapsed
Phenoclusters0.610.060.67
causton0.390.000.39
cellcycle0.250.010.27
clust2Mat0.010.000.01
depthmat0.360.020.38
getpvalue0.020.000.01
giaever0.480.010.50
mRNAclusters0.410.050.45
makeClustM000
mat2UndirG0.020.000.02
permPower0.870.000.87
perms000

GraphAT.Rcheck/examples_x64/GraphAT-Ex.timings:

nameusersystemelapsed
Phenoclusters0.910.191.09
causton0.470.010.48
cellcycle0.220.050.27
clust2Mat0.000.020.01
depthmat0.350.060.42
getpvalue0.020.000.01
giaever0.590.000.60
mRNAclusters0.340.110.45
makeClustM0.000.010.02
mat2UndirG0.030.000.03
permPower1.160.001.16
perms000