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BioC 2.13: BUILD BIN report for GOSim on perceval

This page was generated on 2014-04-05 09:53:14 -0700 (Sat, 05 Apr 2014).

Package 319/750HostnameOS / ArchBUILDCHECKBUILD BIN
GOSim 1.4.2
Holger Froehlich
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/GOSim
Last Changed Rev: 86171 / Revision: 88450
Last Changed Date: 2014-02-06 11:34:29 -0800 (Thu, 06 Feb 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: GOSim
Version: 1.4.2
Command: rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GOSim_1.4.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GOSim.buildbin-libdir
StartedAt: 2014-04-05 05:25:30 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 05:26:08 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 38.0 seconds
RetCode: 0
Status:  OK 
PackageFile: GOSim_1.4.2.tgz
PackageFileSize: 531.5 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GOSim.buildbin-libdir GOSim_1.4.2.tar.gz'
>>>>>>> 

* installing *source* package ‘GOSim’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"` -fPIC  -mtune=core2 -g -O2 -Wall  -c OAWrapper.cpp -o OAWrapper.o
Loading required package: Rcpp
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c hungarian2.c -o hungarian2.o
Loading required package: Rcpp
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o GOSim.so OAWrapper.o hungarian2.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
Loading required package: Rcpp
installing to /Users/biocbuild/bbs-2.13-bioc/meat/GOSim.buildbin-libdir/GOSim/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GOSim)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GOSim.buildbin-libdir/GOSim/libs//GOSim.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "GOSim.buildbin-libdir/GOSim/libs//GOSim.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "GOSim.buildbin-libdir/GOSim/libs//GOSim.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "GOSim.buildbin-libdir/GOSim/libs//GOSim.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "GOSim.buildbin-libdir/GOSim/libs//GOSim.so"