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BioC 2.13: CHECK report for DECIPHER on perceval

This page was generated on 2014-04-05 09:52:43 -0700 (Sat, 05 Apr 2014).

Package 192/750HostnameOS / ArchBUILDCHECKBUILD BIN
DECIPHER 1.8.0
Erik Wright
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/DECIPHER
Last Changed Rev: 81642 / Revision: 88450
Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: DECIPHER
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DECIPHER_1.8.0.tar.gz
StartedAt: 2014-04-05 00:42:28 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 00:46:02 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 214.5 seconds
RetCode: 0
Status:  OK 
CheckDir: DECIPHER.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.13-bioc/meat/DECIPHER.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DECIPHER/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DECIPHER’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DECIPHER’ can be installed ... [17s/18s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘Biostrings’ ‘parallel’ ‘RSQLite’ ‘IRanges’ ‘stats’ ‘XVector’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘parallel’ ‘RSQLite’ ‘stats’ ‘XVector’
  All declared Imports should be used.
Packages in Depends field not imported from:
  ‘RSQLite’ ‘XVector’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in ‘inst/doc’:
  ‘DECIPHERing.Rnw’, ‘DesignMicroarray.Rnw’, ‘DesignPrimers.Rnw’,
  ‘DesignProbes.Rnw’, ‘FindChimeras.Rnw’
A ‘vignettes’ directory will be required as from R 3.1.0
* checking examples ... [54s/55s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
TileSeqs     14.833  0.082  14.963
Array2Matrix  7.732  0.107   7.851
DesignArray   7.644  0.094   7.746
AlignSeqs     6.729  0.183   7.463
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 3 notes.
See
  ‘/Users/biocbuild/bbs-2.13-bioc/meat/DECIPHER.Rcheck/00check.log’
for details.

DECIPHER.Rcheck/00install.out:

* installing *source* package ‘DECIPHER’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c AlignProfiles.c -o AlignProfiles.o
AlignProfiles.c: In function ‘alignProfiles’:
AlignProfiles.c:88: warning: ignoring #pragma omp parallel
AlignProfiles.c:56: warning: unused variable ‘nthreads’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c Biostrings_stubs.c -o Biostrings_stubs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c CalculateDeltaG.c -o CalculateDeltaG.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c CalculateFISH.c -o CalculateFISH.o
CalculateFISH.c: In function ‘calculateFISH’:
CalculateFISH.c:26: warning: missing braces around initializer
CalculateFISH.c:26: warning: (near initialization for ‘dH_DR[0]’)
CalculateFISH.c:32: warning: missing braces around initializer
CalculateFISH.c:32: warning: (near initialization for ‘dS_DR[0]’)
CalculateFISH.c:38: warning: missing braces around initializer
CalculateFISH.c:38: warning: (near initialization for ‘dH_DD[0]’)
CalculateFISH.c:44: warning: missing braces around initializer
CalculateFISH.c:44: warning: (near initialization for ‘dS_DD[0]’)
CalculateFISH.c:50: warning: missing braces around initializer
CalculateFISH.c:50: warning: (near initialization for ‘dH_RR[0]’)
CalculateFISH.c:56: warning: missing braces around initializer
CalculateFISH.c:56: warning: (near initialization for ‘dS_RR[0]’)
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c ClusterML.c -o ClusterML.o
ClusterML.c: In function ‘clusterML’:
ClusterML.c:411: warning: ignoring #pragma omp parallel
ClusterML.c:416: warning: ignoring #pragma omp parallel
ClusterML.c:421: warning: ignoring #pragma omp parallel
ClusterML.c:389: warning: unused variable ‘nthreads’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c ClusterNJ.c -o ClusterNJ.o
ClusterNJ.c: In function ‘clusterNJ’:
ClusterNJ.c:267: warning: ignoring #pragma omp parallel
ClusterNJ.c:277: warning: ignoring #pragma omp critical
ClusterNJ.c:437: warning: ignoring #pragma omp parallel
ClusterNJ.c:449: warning: ignoring #pragma omp parallel
ClusterNJ.c:214: warning: unused variable ‘nthreads’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c ClusterUPGMA.c -o ClusterUPGMA.o
ClusterUPGMA.c: In function ‘clusterUPGMA’:
ClusterUPGMA.c:184: warning: ignoring #pragma omp parallel
ClusterUPGMA.c:194: warning: ignoring #pragma omp critical
ClusterUPGMA.c:344: warning: ignoring #pragma omp parallel
ClusterUPGMA.c:356: warning: ignoring #pragma omp parallel
ClusterUPGMA.c:128: warning: unused variable ‘nthreads’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c CommonGaps.c -o CommonGaps.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c ConsensusSequence.c -o ConsensusSequence.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c DesignProbes.c -o DesignProbes.o
DesignProbes.c: In function ‘designProbes’:
DesignProbes.c:71: warning: missing braces around initializer
DesignProbes.c:71: warning: (near initialization for ‘NN[0]’)
DesignProbes.c:78: warning: missing braces around initializer
DesignProbes.c:78: warning: (near initialization for ‘PM[0]’)
DesignProbes.c:85: warning: missing braces around initializer
DesignProbes.c:85: warning: (near initialization for ‘sMM[0]’)
DesignProbes.c:256: warning: ignoring #pragma omp parallel
DesignProbes.c:702: warning: ignoring #pragma omp critical
DesignProbes.c:58: warning: unused variable ‘nthreads’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c DistanceMatrix.c -o DistanceMatrix.o
DistanceMatrix.c: In function ‘distMatrix’:
DistanceMatrix.c:175: warning: ignoring #pragma omp parallel
DistanceMatrix.c:136: warning: unused variable ‘nthreads’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c MultiMatch.c -o MultiMatch.o
MultiMatch.c: In function ‘intMatch’:
MultiMatch.c:190: warning: ignoring #pragma omp parallel
MultiMatch.c:184: warning: unused variable ‘nthreads’
MultiMatch.c: In function ‘firstMatchUpper’:
MultiMatch.c:217: warning: ignoring #pragma omp parallel
MultiMatch.c:215: warning: unused variable ‘nthreads’
MultiMatch.c: In function ‘matchLists’:
MultiMatch.c:258: warning: ignoring #pragma omp parallel
MultiMatch.c:244: warning: unused variable ‘nthreads’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c NNLS.c -o NNLS.o
NNLS.c: In function ‘NNLS’:
NNLS.c:89: warning: ignoring #pragma omp parallel
NNLS.c:49: warning: unused variable ‘nthreads’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c R_init_decipher.c -o R_init_decipher.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c ReplaceChars.c -o ReplaceChars.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQLite/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/XVector/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c TerminalMismatch.c -o TerminalMismatch.o
TerminalMismatch.c: In function ‘terminalMismatch’:
TerminalMismatch.c:47: warning: ignoring #pragma omp parallel
TerminalMismatch.c:40: warning: unused variable ‘nthreads’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o DECIPHER.so AlignProfiles.o Biostrings_stubs.o CalculateDeltaG.o CalculateFISH.o ClusterML.o ClusterNJ.o ClusterUPGMA.o CommonGaps.o ConsensusSequence.o DesignProbes.o DistanceMatrix.o MultiMatch.o NNLS.o R_init_decipher.o ReplaceChars.o TerminalMismatch.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.13-bioc/meat/DECIPHER.Rcheck/DECIPHER/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DECIPHER)

DECIPHER.Rcheck/DECIPHER-Ex.timings:

nameusersystemelapsed
Add2DB0.5260.0220.551
AlignProfiles1.9770.0632.056
AlignSeqs6.7290.1837.463
Array2Matrix7.7320.1077.851
BrowseDB0.0530.0110.065
BrowseSequences0.1000.0160.115
CalculateEfficiencyArray0.0530.0210.073
CalculateEfficiencyFISH0.0150.0050.019
CalculateEfficiencyPCR0.0150.0060.020
ConsensusSequence0.0190.0050.023
CreateChimeras1.7600.0551.832
DB2FASTA0.0470.0240.073
DesignArray7.6440.0947.746
DesignPrimers0.0040.0040.009
DesignProbes0.0050.0050.009
DistanceMatrix0.0180.0220.042
FindChimeras0.5760.0330.609
FormGroups0.0460.0060.051
IdClusters0.0400.0180.057
IdConsensus1.9990.0632.062
IdLengths0.0420.0080.050
IdentifyByRank0.0350.0060.040
MODELS0.0020.0060.008
MaskAlignment1.0750.0381.115
NNLS0.0150.0180.034
SearchDB0.0290.0080.037
Seqs2DB0.6330.0410.679
TerminalChar0.0300.0070.040
TileSeqs14.833 0.08214.963
deltaGrules0.0180.0150.032