Back to the "Multiple platform build/check report" A  B  C [D] E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 2.13: CHECK report for DAVIDQuery on moscato1

This page was generated on 2014-04-05 09:49:50 -0700 (Sat, 05 Apr 2014).

Package 188/750HostnameOS / ArchBUILDCHECKBUILD BIN
DAVIDQuery 1.22.0
Roger Day
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/DAVIDQuery
Last Changed Rev: 81642 / Revision: 88450
Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: DAVIDQuery
Version: 1.22.0
Command: rm -rf DAVIDQuery.buildbin-libdir && mkdir DAVIDQuery.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DAVIDQuery.buildbin-libdir DAVIDQuery_1.22.0.tar.gz >DAVIDQuery-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=DAVIDQuery.buildbin-libdir --install="check:DAVIDQuery-install.out" --force-multiarch --no-vignettes --timings DAVIDQuery_1.22.0.tar.gz && mv DAVIDQuery.buildbin-libdir/* DAVIDQuery.Rcheck/ && rmdir DAVIDQuery.buildbin-libdir
StartedAt: 2014-04-05 03:22:32 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 03:23:24 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 52.3 seconds
RetCode: 0
Status:  OK  
CheckDir: DAVIDQuery.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/DAVIDQuery.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DAVIDQuery/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DAVIDQuery' version '1.22.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DAVIDQuery' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'RCurl'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
File 'DAVIDQuery/R/zzz.R':
  .onAttach calls:
    cat("This is DAVIDQuery Version ", DQVersion, " ", DQdate, "\n")

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... NOTE
The following files should probably not be installed:
  'DAVIDQuery.lyx'

Consider the use of a .Rinstignore file: see 'Writing R Extensions',
or move the vignette sources from 'inst/doc' to 'vignettes'.
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
  'DAVIDQuery.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [7s] OK
** running examples for arch 'x64' ... [7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 4 notes.
See
  'D:/biocbld/bbs-2.13-bioc/meat/DAVIDQuery.Rcheck/00check.log'
for details.

DAVIDQuery.Rcheck/00install.out:


install for i386

* installing *source* package 'DAVIDQuery' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
This is DAVIDQuery Version  1.22.0   2010-06-10 

install for x64

* installing *source* package 'DAVIDQuery' ...
** testing if installed package can be loaded
This is DAVIDQuery Version  1.22.0   2010-06-10 
* MD5 sums
packaged installation of 'DAVIDQuery' as DAVIDQuery_1.22.0.zip
* DONE (DAVIDQuery)

DAVIDQuery.Rcheck/examples_i386/DAVIDQuery-Ex.timings:

nameusersystemelapsed
DAVIDQuery0.220.031.51
bracketedStrings000
convertIDList0.010.000.01
findInBrackets000
getAffyChipTypes0.020.000.02
getAffyProbesetList0.330.022.93
getAnnotationChoices000
getIdConversionChoices000
requestIDConversion0.010.000.02
testGene2Gene0.080.001.70
uploadIDList000

DAVIDQuery.Rcheck/examples_x64/DAVIDQuery-Ex.timings:

nameusersystemelapsed
DAVIDQuery0.300.111.45
bracketedStrings0.020.000.02
convertIDList000
findInBrackets000
getAffyChipTypes000
getAffyProbesetList0.360.003.01
getAnnotationChoices0.020.000.02
getIdConversionChoices000
requestIDConversion000
testGene2Gene0.110.001.75
uploadIDList000