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BioC 2.13: BUILD BIN report for BGmix on perceval

This page was generated on 2014-04-05 09:52:03 -0700 (Sat, 05 Apr 2014).

Package 70/750HostnameOS / ArchBUILDCHECKBUILD BIN
BGmix 1.22.0
Alex Lewin
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/BGmix
Last Changed Rev: 81642 / Revision: 88450
Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 N O T   S U P P O R T E D
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: BGmix
Version: 1.22.0
Command: rm -rf BGmix.buildbin-libdir && mkdir BGmix.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BGmix_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BGmix.buildbin-libdir
StartedAt: 2014-04-05 05:15:27 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 05:15:38 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 11.1 seconds
RetCode: 0
Status:  OK 
PackageFile: BGmix_1.22.0.tgz
PackageFileSize: 375 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BGmix.buildbin-libdir BGmix_1.22.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BGmix’ ...
checking for gcc... llvm-gcc-4.2 -arch x86_64 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether llvm-gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... yes
checking for llvm-gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO C89... none needed
checking for llvm-gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO C99... none needed
checking for cos in -lm... yes
Untarring Boost header files...
checking for an ANSI C-conforming const... yes
checking for inline... inline
configure: creating ./config.status
config.status: creating src/Makevars
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I ../boostIncl -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -DUSING_R -c BGmix_main.cpp -o BGmix_main.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I ../boostIncl -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -DUSING_R -c rundir.cpp -o rundir.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I ../boostIncl -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -DUSING_R -c updates_BGmix.cpp -o updates_BGmix.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o BGmix.so BGmix_main.o rundir.o updates_BGmix.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
rm -r ../boostIncl 
installing to /Users/biocbuild/bbs-2.13-bioc/meat/BGmix.buildbin-libdir/BGmix/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BGmix)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BGmix.buildbin-libdir/BGmix/libs//BGmix.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "BGmix.buildbin-libdir/BGmix/libs//BGmix.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "BGmix.buildbin-libdir/BGmix/libs//BGmix.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "BGmix.buildbin-libdir/BGmix/libs//BGmix.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "BGmix.buildbin-libdir/BGmix/libs//BGmix.so"