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BioC 2.13: CHECK report for ASSET on moscato1

This page was generated on 2014-04-05 09:51:28 -0700 (Sat, 05 Apr 2014).

Package 56/750HostnameOS / ArchBUILDCHECKBUILD BIN
ASSET 1.0.0
William Wheeler
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/ASSET
Last Changed Rev: 81642 / Revision: 88450
Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: ASSET
Version: 1.0.0
Command: rm -rf ASSET.buildbin-libdir && mkdir ASSET.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ASSET.buildbin-libdir ASSET_1.0.0.tar.gz >ASSET-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=ASSET.buildbin-libdir --install="check:ASSET-install.out" --force-multiarch --no-vignettes --timings ASSET_1.0.0.tar.gz && mv ASSET.buildbin-libdir/* ASSET.Rcheck/ && rmdir ASSET.buildbin-libdir
StartedAt: 2014-04-05 02:19:52 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 02:22:40 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 168.3 seconds
RetCode: 0
Status:  OK  
CheckDir: ASSET.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/ASSET.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ASSET/DESCRIPTION' ... OK
* this is package 'ASSET' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ASSET' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License components with restrictions not permitted:
  GPL-2 + file LICENSE
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'rmeta'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
  'vignette.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [18s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
h.types 11.68   0.02    11.7
** running examples for arch 'x64' ... [24s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
h.types 15.66   0.04   15.71
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'runTests.R' [13s]
 [13s] OK
** running tests for arch 'x64'
  Running 'runTests.R' [17s]
 [17s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 3 notes.
See
  'D:/biocbld/bbs-2.13-bioc/meat/ASSET.Rcheck/00check.log'
for details.

ASSET.Rcheck/00install.out:


install for i386

* installing *source* package 'ASSET' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ASSET' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ASSET' as ASSET_1.0.0.zip
* DONE (ASSET)

ASSET.Rcheck/examples_i386/ASSET-Ex.timings:

nameusersystemelapsed
ex_trait0.110.000.11
ex_types0.010.000.02
h.forestPlot1.080.001.07
h.summary0.670.000.72
h.traits0.660.000.66
h.types11.68 0.0211.70
p.dlm0.030.000.03
p.tube0.050.000.05
z.max0.030.000.03

ASSET.Rcheck/examples_x64/ASSET-Ex.timings:

nameusersystemelapsed
ex_trait0.010.010.03
ex_types0.030.000.04
h.forestPlot1.390.021.40
h.summary1.200.011.22
h.traits0.850.000.84
h.types15.66 0.0415.71
p.dlm0.040.000.04
p.tube0.030.000.03
z.max0.050.000.05