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BioC experimental data: CHECK report for yeastRNASeq on moscato2

This page was generated on 2013-10-08 16:07:24 -0700 (Tue, 08 Oct 2013).

Package 156/156HostnameOS / ArchBUILDCHECKBUILD BIN
yeastRNASeq 0.0.8
J. Bullard
Snapshot Date: 2013-10-08 10:15:19 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/yeastRNASeq
Last Changed Rev: 2317 / Revision: 2510
Last Changed Date: 2013-04-03 15:11:40 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  WARNINGS  OK 

Summary

Package: yeastRNASeq
Version: 0.0.8
Command: rm -rf yeastRNASeq.buildbin-libdir && mkdir yeastRNASeq.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=yeastRNASeq.buildbin-libdir yeastRNASeq_0.0.8.tar.gz >yeastRNASeq-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=yeastRNASeq.buildbin-libdir --install="check:yeastRNASeq-install.out" --force-multiarch --no-vignettes --timings yeastRNASeq_0.0.8.tar.gz && mv yeastRNASeq.buildbin-libdir/* yeastRNASeq.Rcheck/ && rmdir yeastRNASeq.buildbin-libdir
StartedAt: 2013-10-08 14:03:49 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 14:12:02 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 492.5 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: yeastRNASeq.Rcheck
Warnings: 1

Command output

* using log directory 'E:/biocbld/bbs-2.12-data-experiment/meat/yeastRNASeq.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'yeastRNASeq/DESCRIPTION' ... OK
* this is package 'yeastRNASeq' version '0.0.8'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'yeastRNASeq' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 313.7Mb
  sub-directories of 1Mb or more:
    data    62.7Mb
    reads  250.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                    old_size new_size compress
  geneLevelData.rda     68Kb     43Kb    bzip2
  yeastAligned.rda    62.6Mb   44.4Mb       xz
  yeastAnno.rda         80Kb     59Kb       xz
* checking installed files from 'inst/doc' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.12-data-experiment/meat/yeastRNASeq.Rcheck/00check.log'
for details.

yeastRNASeq.Rcheck/00install.out:


install for i386

* installing *source* package 'yeastRNASeq' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'yeastRNASeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'yeastRNASeq' as yeastRNASeq_0.0.8.zip
* DONE (yeastRNASeq)