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BioC experimental data: CHECK report for pRolocdata on george2

This page was generated on 2013-10-08 16:07:19 -0700 (Tue, 08 Oct 2013).

Package 123/156HostnameOS / ArchBUILDCHECKBUILD BIN
pRolocdata 1.0.2
Laurent Gatto
Snapshot Date: 2013-10-08 10:15:19 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/pRolocdata
Last Changed Rev: 2473 / Revision: 2510
Last Changed Date: 2013-10-01 00:41:44 -0700 (Tue, 01 Oct 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: pRolocdata
Version: 1.0.2
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings pRolocdata_1.0.2.tar.gz
StartedAt: 2013-10-08 13:10:17 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 13:14:03 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 225.6 seconds
RetCode: 0
Status:  OK 
CheckDir: pRolocdata.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-data-experiment/meat/pRolocdata.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pRolocdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pRolocdata’ version ‘1.0.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pRolocdata’ can be installed ... [20s/21s] OK
* checking installed package size ... NOTE
  installed size is  8.5Mb
  sub-directories of 1Mb or more:
    extdata   7.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [22s/24s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
hall2009 10.745  0.332  12.002
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-data-experiment/meat/pRolocdata.Rcheck/00check.log’
for details.

pRolocdata.Rcheck/00install.out:

* installing *source* package ‘pRolocdata’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (pRolocdata)

pRolocdata.Rcheck/pRolocdata-Ex.timings:

nameusersystemelapsed
andy20110.0840.0120.094
at_chloro0.2440.0320.400
dunkley20060.040.000.04
foster20060.0640.0000.062
hall200910.745 0.33212.002
nikolovski20120.7080.0280.778
pRolocdata0.0200.0320.209
tan20090.0520.0000.065
trotter20100.6680.0320.823