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BioC experimental data: CHECK report for miRNATarget on petty

This page was generated on 2013-10-08 16:07:36 -0700 (Tue, 08 Oct 2013).

Package 101/156HostnameOS / ArchBUILDCHECKBUILD BIN
miRNATarget 0.99.3
Y-h. Taguchi
Snapshot Date: 2013-10-08 10:15:19 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/miRNATarget
Last Changed Rev: 2317 / Revision: 2510
Last Changed Date: 2013-04-03 15:11:40 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: miRNATarget
Version: 0.99.3
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch miRNATarget_0.99.3.tar.gz
StartedAt: 2013-10-08 14:12:02 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 14:13:16 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 74.7 seconds
RetCode: 0
Status:  OK 
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-data-experiment/meat/miRNATarget.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'miRNATarget/DESCRIPTION' ... OK
* this is package 'miRNATarget' version '0.99.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'miRNATarget' can be installed ... [3s/3s] OK
* checking installed package size ... NOTE
  installed size is 23.0Mb
  sub-directories of 1Mb or more:
    data  22.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [26s/26s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-data-experiment/meat/miRNATarget.Rcheck/00check.log'
for details.

miRNATarget.Rcheck/00install.out:

* installing *source* package 'miRNATarget' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

miRNATarget.Rcheck/miRNATarget-Ex.timings:

nameusersystemelapsed
HS_conv_id0.0310.0090.038
HS_refseq_to_affy_hc_g1100.0110.0080.019
HS_refseq_to_affy_hg_focus0.0440.0090.053
HS_refseq_to_affy_hg_u133_plus_20.1470.0140.183
HS_refseq_to_affy_hg_u133a0.0900.0080.105
HS_refseq_to_affy_hg_u133a_20.1390.0080.176
HS_refseq_to_affy_hg_u133b0.0470.0060.053
HS_refseq_to_affy_hg_u95a0.0560.0060.064
HS_refseq_to_affy_hg_u95av20.0540.0060.059
HS_refseq_to_affy_hg_u95b0.0400.0060.046
HS_refseq_to_affy_hg_u95c0.0340.0070.041
HS_refseq_to_affy_hg_u95d0.0140.0150.028
HS_refseq_to_affy_hg_u95e0.0220.0150.036
HS_refseq_to_affy_huex_1_0_st_v22.1580.0722.230
HS_refseq_to_affy_hugene_1_0_st_v10.0910.0180.109
HS_refseq_to_affy_hugenefl0.0270.0040.031
HS_refseq_to_affy_u133_x3p0.1390.0110.150
HS_refseq_to_agilent_cgh_44b0.0390.0090.048
HS_refseq_to_agilent_wholegenome0.1010.0110.112
HS_refseq_to_canonical_transcript_stable_id0.0830.0090.092
HS_refseq_to_ccds0.0640.0100.074
HS_refseq_to_codelink0.0950.0140.109
HS_refseq_to_embl0.4230.0170.441
HS_refseq_to_ensembl_gene_id0.1140.0070.121
HS_refseq_to_ensembl_peptide_id0.2120.0090.221
HS_refseq_to_ensembl_transcript_id0.1460.0090.154
HS_refseq_to_entrezgene0.1080.0090.117
HS_refseq_to_hgnc_id0.1070.0180.125
HS_refseq_to_hgnc_symbol0.1050.0100.115
HS_refseq_to_hgnc_transcript_name0.1430.0150.159
HS_refseq_to_illumina_humanht_120.1080.0140.123
HS_refseq_to_illumina_humanwg_6_v10.0940.0140.108
HS_refseq_to_illumina_humanwg_6_v20.1140.0140.127
HS_refseq_to_illumina_humanwg_6_v30.1040.0150.118
HS_refseq_to_interpro0.2030.0140.218
HS_refseq_to_ipi0.1490.0150.165
HS_refseq_to_merops0.0070.0010.009
HS_refseq_to_pdb0.1410.0090.149
HS_refseq_to_pfam0.0890.0070.095
HS_refseq_to_phalanx_onearray0.0910.0110.102
HS_refseq_to_protein_id0.4490.0290.478
HS_refseq_to_refseq_dna0.0680.0150.084
HS_refseq_to_refseq_genomic0.0210.0100.031
HS_refseq_to_refseq_peptide0.1100.0090.120
HS_refseq_to_rfam0.0040.0020.007
HS_refseq_to_rfam_gene_name0.0030.0030.005
HS_refseq_to_rfam_transcript_name0.0030.0020.005
HS_refseq_to_smart0.0640.0070.072
HS_refseq_to_tigrfam0.0150.0060.021
HS_refseq_to_ucsc0.1070.0110.118
HS_refseq_to_unigene0.1230.0100.133
HS_refseq_to_uniprot_genename0.1210.0110.132
HS_refseq_to_wikigene_name0.0940.0100.103
MM_conv_id0.0210.0020.023
MM_refseq_to_affy_mg_u74a0.0310.0080.038
MM_refseq_to_affy_mg_u74av20.0310.0080.039
MM_refseq_to_affy_mg_u74b0.0240.0050.029
MM_refseq_to_affy_mg_u74bv20.0420.0050.047
MM_refseq_to_affy_mg_u74c0.0250.0110.035
MM_refseq_to_affy_mg_u74cv20.0130.0120.025
MM_refseq_to_affy_moe430a0.0790.0080.087
MM_refseq_to_affy_moe430b0.0280.0070.035
MM_refseq_to_affy_moex_1_0_st_v10.7900.0430.832
MM_refseq_to_affy_mogene_1_0_st_v10.1340.0130.147
MM_refseq_to_affy_mouse430_20.1140.0120.125
MM_refseq_to_affy_mouse430a_20.0860.0120.098
MM_refseq_to_affy_mu11ksuba0.0440.0050.049
MM_refseq_to_affy_mu11ksubb0.0380.0110.050
MM_refseq_to_agilent_wholegenome0.1010.0120.112
MM_refseq_to_canonical_transcript_stable_id0.0750.0070.082
MM_refseq_to_ccds0.0620.0100.072
MM_refseq_to_codelink0.0570.0140.070
MM_refseq_to_embl0.2500.0240.275
MM_refseq_to_ensembl_gene_id0.0690.0080.078
MM_refseq_to_ensembl_peptide_id0.0680.0080.075
MM_refseq_to_ensembl_transcript_id0.0910.0120.104
MM_refseq_to_entrezgene0.0870.0180.104
MM_refseq_to_fantom0.0950.0090.103
MM_refseq_to_illumina_mousewg_6_v10.0900.0080.099
MM_refseq_to_illumina_mousewg_6_v20.0960.0100.105
MM_refseq_to_interpro0.1610.0150.175
MM_refseq_to_ipi0.1000.0090.110
MM_refseq_to_merops0.0900.0040.094
MM_refseq_to_mgi_id0.0940.0090.102
MM_refseq_to_mgi_symbol0.0940.0100.104
MM_refseq_to_mgi_transcript_name0.0930.0110.105
MM_refseq_to_pdb0.0320.0090.041
MM_refseq_to_pfam0.0900.0140.103
MM_refseq_to_phalanx_onearray0.0630.0100.074
MM_refseq_to_protein_id0.2820.0180.301
MM_refseq_to_refseq_dna0.0860.0160.103
MM_refseq_to_refseq_peptide0.1040.0080.112
MM_refseq_to_rfam0.0310.0020.032
MM_refseq_to_rfam_gene_name0.0290.0020.032
MM_refseq_to_rfam_transcript_name0.0300.0020.032
MM_refseq_to_smart0.0720.0070.080
MM_refseq_to_tigrfam0.0060.0060.012
MM_refseq_to_ucsc0.0650.0110.076
MM_refseq_to_unigene0.0890.0100.100
MM_refseq_to_uniprot_genename0.0860.0150.100
MM_refseq_to_wikigene_name0.0670.0070.074
TBL22.0250.1192.144
TBL2_HS4.4190.2744.695
TBL2_MM2.1340.1572.291
conv_id0.0050.0020.008
id_conv0.0690.0140.084