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BioC experimental data: CHECK report for cnvGSAdata on george2

This page was generated on 2013-10-08 16:07:18 -0700 (Tue, 08 Oct 2013).

Package 32/156HostnameOS / ArchBUILDCHECKBUILD BIN
cnvGSAdata 0.99.4
Robert Ziman
Snapshot Date: 2013-10-08 10:15:19 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/cnvGSAdata
Last Changed Rev: 2481 / Revision: 2510
Last Changed Date: 2013-10-04 18:56:43 -0700 (Fri, 04 Oct 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: cnvGSAdata
Version: 0.99.4
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings cnvGSAdata_0.99.4.tar.gz
StartedAt: 2013-10-08 12:31:32 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 12:32:20 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 48.3 seconds
RetCode: 0
Status:  OK 
CheckDir: cnvGSAdata.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-data-experiment/meat/cnvGSAdata.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cnvGSAdata/DESCRIPTION’ ... OK
* this is package ‘cnvGSAdata’ version ‘0.99.4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cnvGSAdata’ can be installed ... [2s/2s] OK
* checking installed package size ... NOTE
  installed size is 30.5Mb
  sub-directories of 1Mb or more:
    data      2.0Mb
    extdata  28.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [18s/20s] OK
Examples with CPU or elapsed time > 5s
                                                user system elapsed
merge_00k_flank_hg18_refGene_jun2011_exon.gvf 11.525  0.176  13.204
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-data-experiment/meat/cnvGSAdata.Rcheck/00check.log’
for details.

cnvGSAdata.Rcheck/00install.out:

* installing *source* package ‘cnvGSAdata’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (cnvGSAdata)

cnvGSAdata.Rcheck/cnvGSAdata-Ex.timings:

nameusersystemelapsed
cnv.gvf2.5960.0202.812
gsData.gmt2.1760.0082.318
merge_00k_flank_hg18_refGene_jun2011_exon.gvf11.525 0.17613.204
merge_00k_flank_hg18_refGene_jun2011_transcript.gvf0.4680.0320.968
s2class.txt0.0160.0000.034