BioC experimental data: CHECK report for cheung2010 on moscato2

Package: cheung2010

Version: 0.0.27

Command: rm -rf cheung2010.buildbin-libdir && mkdir cheung2010.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=cheung2010.buildbin-libdir cheung2010_0.0.27.tar.gz >cheung2010-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=cheung2010.buildbin-libdir --install="check:cheung2010-install.out" --force-multiarch --no-vignettes --timings cheung2010_0.0.27.tar.gz && mv cheung2010.buildbin-libdir/* cheung2010.Rcheck/ && rmdir cheung2010.buildbin-libdir

StartedAt: 2013-10-08 13:03:29 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 13:14:49 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 680.4 seconds

RetCode: 0

Status:  OK

CheckDir: cheung2010.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-data-experiment/meat/cheung2010.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cheung2010/DESCRIPTION' ... OK
* this is package 'cheung2010' version '0.0.27'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cheung2010' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 51.6Mb
  sub-directories of 1Mb or more:
    data      11.2Mb
    parts     30.9Mb
    rmaexprs   9.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Non-standard license specification:
  Artistic 2.0
Standardizable: TRUE
Standardized license specification:
  Artistic-2.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'cheung2010/R/zzz.R':
  .onLoad calls:
    packageStartupMessage(paste("To get a tailored smlSet, use getSS(\"",     pkgname, "\", [chrvec])", sep = ""), "\n", "available chromosomes are named ",     selectSome(cn), "\n")

See section 'Good practice' in '?.onAttach'.
* checking Rd files ... NOTE
prepare_Rd: cheung2010-package.Rd:53-55: Dropping empty section \references
prepare_Rd: cheung2010-package.Rd:59-62: Dropping empty section \seealso
prepare_Rd: cheung2010-package.Rd:63-65: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [53s] OK
Examples with CPU or elapsed time > 5s
                user system elapsed
cheung2010locs 10.76    0.1   32.12
** running examples for arch 'x64' ... [28s] OK
Examples with CPU or elapsed time > 5s
                user system elapsed
cheung2010locs 10.72   0.07   11.87
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 4 notes.
See
  'E:/biocbld/bbs-2.12-data-experiment/meat/cheung2010.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'cheung2010' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'cheung2010' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cheung2010' as cheung2010_0.0.27.zip
* DONE (cheung2010)