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BioC experimental data: CHECK report for XhybCasneuf on george2

This page was generated on 2013-10-08 16:07:09 -0700 (Tue, 08 Oct 2013).

Package 151/156HostnameOS / ArchBUILDCHECKBUILD BIN
XhybCasneuf 1.0.11
Tineke Casneuf
Snapshot Date: 2013-10-08 10:15:19 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/XhybCasneuf
Last Changed Rev: 2317 / Revision: 2510
Last Changed Date: 2013-04-03 15:11:40 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ WARNINGS ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  WARNINGS  OK 

Summary

Package: XhybCasneuf
Version: 1.0.11
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings XhybCasneuf_1.0.11.tar.gz
StartedAt: 2013-10-08 13:19:08 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 13:22:14 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 186.2 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: XhybCasneuf.Rcheck
Warnings: 1

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-data-experiment/meat/XhybCasneuf.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘XhybCasneuf/DESCRIPTION’ ... OK
* this is package ‘XhybCasneuf’ version ‘1.0.11’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘XhybCasneuf’ can be installed ... [15s/17s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                         old_size new_size compress
  AffysTissue.noBl.rda      202Kb    154Kb       xz
  AffysTissue.rda           741Kb    491Kb       xz
  AffysTissueMC.rda         886Kb    589Kb       xz
  CustomsTissue.noBl.rda    153Kb    120Kb       xz
  CustomsTissue.rda         552Kb    373Kb       xz
  CustomsTissueMC.rda       688Kb    461Kb       xz
* checking installed files from ‘inst/doc’ ... NOTE
The following files should probably not be installed:
  ‘Makefile’

Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
* checking examples ... [10s/10s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-data-experiment/meat/XhybCasneuf.Rcheck/00check.log’
for details.

XhybCasneuf.Rcheck/00install.out:

* installing *source* package ‘XhybCasneuf’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (XhybCasneuf)

XhybCasneuf.Rcheck/XhybCasneuf-Ex.timings:

nameusersystemelapsed
AffysTissue1.1520.0121.227
CustomsTissue0.4880.0080.564
XhybExamples-class0.0880.0040.172
ex10.3880.0000.389
runSimulation0.0520.0000.075