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BioC experimental data: CHECK report for LiebermanAidenHiC2009 on george2

This page was generated on 2013-10-08 16:07:16 -0700 (Tue, 08 Oct 2013).

Package 90/156HostnameOS / ArchBUILDCHECKBUILD BIN
LiebermanAidenHiC2009 0.1.14
Felix Klein
Snapshot Date: 2013-10-08 10:15:19 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/LiebermanAidenHiC2009
Last Changed Rev: 2317 / Revision: 2510
Last Changed Date: 2013-04-03 15:11:40 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ WARNINGS ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  WARNINGS  OK 

Summary

Package: LiebermanAidenHiC2009
Version: 0.1.14
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings LiebermanAidenHiC2009_0.1.14.tar.gz
StartedAt: 2013-10-08 12:57:56 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 12:59:53 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 117.0 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: LiebermanAidenHiC2009.Rcheck
Warnings: 2

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-data-experiment/meat/LiebermanAidenHiC2009.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LiebermanAidenHiC2009/DESCRIPTION’ ... OK
* this is package ‘LiebermanAidenHiC2009’ version ‘0.1.14’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LiebermanAidenHiC2009’ can be installed ... [6s/6s] OK
* checking installed package size ... NOTE
  installed size is 10.5Mb
  sub-directories of 1Mb or more:
    data   9.2Mb
    doc    1.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  ‘DNAse1.df’ ‘DNAse2.df’ ‘H3K27me3.df’ ‘H3K36me3.df’ ‘HiC_GM_chr14’
All user-level objects in a package should have documentation entries.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                     old_size new_size compress
  ChipSeqData.RData     203Kb    117Kb       xz
  HiC_GM_chr14.RData    9.0Mb    6.0Mb       xz
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 2 warnings.
NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-data-experiment/meat/LiebermanAidenHiC2009.Rcheck/00check.log’
for details.

LiebermanAidenHiC2009.Rcheck/00install.out:

* installing *source* package ‘LiebermanAidenHiC2009’ ...
** data
** inst
** help
No man pages found in package  ‘LiebermanAidenHiC2009’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (LiebermanAidenHiC2009)