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BioC experimental data: CHECK report for CCl4 on george2

This page was generated on 2013-10-08 16:07:08 -0700 (Tue, 08 Oct 2013).

Package 22/156HostnameOS / ArchBUILDCHECKBUILD BIN
CCl4 1.0.14
Audrey Kauffmann
Snapshot Date: 2013-10-08 10:15:19 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/CCl4
Last Changed Rev: 2317 / Revision: 2510
Last Changed Date: 2013-04-03 15:11:40 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ WARNINGS ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  WARNINGS  OK 

Summary

Package: CCl4
Version: 1.0.14
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings CCl4_1.0.14.tar.gz
StartedAt: 2013-10-08 12:27:05 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 12:29:19 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 133.8 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: CCl4.Rcheck
Warnings: 1

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-data-experiment/meat/CCl4.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CCl4/DESCRIPTION’ ... OK
* this is package ‘CCl4’ version ‘1.0.14’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CCl4’ can be installed ... [4s/4s] OK
* checking installed package size ... NOTE
  installed size is 298.6Mb
  sub-directories of 1Mb or more:
    data       6.2Mb
    extdata  292.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                    old_size new_size compress
  CCl4.RData           3.3Mb    2.0Mb       xz
  CCl4_RGList.RData    2.9Mb    2.0Mb       xz
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [5s/6s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘validDataFiles.R’ [3s/3s]
  Comparing ‘validDataFiles.Rout’ to ‘validDataFiles.Rout.save’ ...5,24d4
< Attaching package: 'BiocGenerics'
< 
< The following objects are masked from 'package:parallel':
< 
<     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
<     clusterExport, clusterMap, parApply, parCapply, parLapply,
<     parLapplyLB, parRapply, parSapply, parSapplyLB
< 
< The following object is masked from 'package:stats':
< 
<     xtabs
< 
< The following objects are masked from 'package:base':
< 
<     Filter, Find, Map, Position, Reduce, anyDuplicated, as.data.frame,
<     cbind, colnames, duplicated, eval, get, intersect, lapply, mapply,
<     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
<     rbind, rep.int, rownames, sapply, setdiff, sort, table, tapply,
<     union, unique, unlist
< 
27,29c7,9
<     Vignettes contain introductory material; view with
<     'browseVignettes()'. To cite Bioconductor, see
<     'citation("Biobase")', and for packages 'citation("pkgname")'.
---
>   Vignettes contain introductory material. To view, type
>   'openVignette()'. To cite Bioconductor, see
>   'citation("Biobase")' and for packages 'citation(pkgname)'.
 [3s/4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-data-experiment/meat/CCl4.Rcheck/00check.log’
for details.

CCl4.Rcheck/00install.out:

* installing *source* package ‘CCl4’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CCl4)

CCl4.Rcheck/CCl4-Ex.timings:

nameusersystemelapsed
CCl41.8680.0602.568