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BioC 2.12: CHECK report for inSilicoMerging on moscato2

This page was generated on 2013-10-09 09:39:07 -0700 (Wed, 09 Oct 2013).

Package 341/671HostnameOS / ArchBUILDCHECKBUILD BIN
inSilicoMerging 1.4.1
Jonatan Taminau , Stijn Meganck
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/inSilicoMerging
Last Changed Rev: 79307 / Revision: 81334
Last Changed Date: 2013-08-07 12:16:53 -0700 (Wed, 07 Aug 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: inSilicoMerging
Version: 1.4.1
Command: rm -rf inSilicoMerging.buildbin-libdir && mkdir inSilicoMerging.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=inSilicoMerging.buildbin-libdir inSilicoMerging_1.4.1.tar.gz >inSilicoMerging-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=inSilicoMerging.buildbin-libdir --install="check:inSilicoMerging-install.out" --force-multiarch --no-vignettes --timings inSilicoMerging_1.4.1.tar.gz && mv inSilicoMerging.buildbin-libdir/* inSilicoMerging.Rcheck/ && rmdir inSilicoMerging.buildbin-libdir
StartedAt: 2013-10-09 02:42:50 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 02:48:13 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 323.5 seconds
RetCode: 0
Status:  OK  
CheckDir: inSilicoMerging.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/inSilicoMerging.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'inSilicoMerging/DESCRIPTION' ... OK
* this is package 'inSilicoMerging' version '1.4.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'inSilicoMerging' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [81s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
plotMDS             23.28   0.47   25.17
plotRLE             12.27   0.46   14.15
plotGeneWiseBoxPlot  6.92   0.48    8.83
merge                4.35   0.32   29.19
** running examples for arch 'x64' ... [79s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
plotMDS             28.10   0.37   29.90
plotRLE             13.71   0.44   15.76
plotGeneWiseBoxPlot  7.70   0.29    9.42
merge                5.85   0.41   18.88
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'inSilicoMerging_unit_tests.R' [23s]
 [24s] OK
** running tests for arch 'x64'
  Running 'inSilicoMerging_unit_tests.R' [26s]
 [26s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

inSilicoMerging.Rcheck/00install.out:


install for i386

* installing *source* package 'inSilicoMerging' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'inSilicoMerging' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'inSilicoMerging' as inSilicoMerging_1.4.1.zip
* DONE (inSilicoMerging)