fabia 2.6.2
Sepp Hochreiter
| Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/fabia | | Last Changed Rev: 80397 / Revision: 81334 | | Last Changed Date: 2013-09-13 06:23:31 -0700 (Fri, 13 Sep 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | [ OK ] | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/fabia.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘fabia/DESCRIPTION’ ... OK
* this is package ‘fabia’ version ‘2.6.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fabia’ can be installed ... [15s/15s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘fabia/R/zzz.R’:
.onLoad calls:
packageStartupMessage("+----------------------------+ \n", "|............................| \n", "|............................| \n", "|..............########......| ####### # ###### ### # \n", "|..............########......| # # # # # # # # \n", "|.....####.....########......| # # # # # # # # \n", "|.....####.....########......| ##### # # ###### # # # \n", "|.....####...................| # ####### # # # ####### \n", "|.....####...........###.....| # # # # # # # # \n", "|....................###.....| # # # ###### ### # # \n", "|....................###.....| \n", "|............................| \n", "+----------------------------+ \n")
packageStartupMessage("Citation: S. Hochreiter et al.,", "\n", "FABIA: Factor Analysis for Bicluster Acquisition,", "\n", "Bioinformatics 26(12):1520-1527, 2010.", "\n", "BibTex: enter 'toBibtex(citation(\"fabia\"))'", "\n\n", "Homepage: http://www.bioinf.jku.at/software/fabia/fabia.html", "\n\n", "FABIA Package Version ", version, "\n")
See section ‘Good practice’ in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [8s/8s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/home/biocbuild/bbs-2.12-bioc/meat/fabia.Rcheck/00check.log’
for details.
* installing *source* package ‘fabia’ ...
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG -I/usr/local/include -I/usr/local/include -g -O2 -Wall -fpic -g -O2 -Wall -c fabiac.c -o fabiac.o
fabiac.c: In function ‘readSpfabicResult’:
fabiac.c:3569:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3577:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3600:8: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3604:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3607:8: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3610:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3613:8: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3644:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3650:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3671:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3674:8: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3689:8: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3705:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3708:8: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c: In function ‘readSamplesSpfabic’:
fabiac.c:3348:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3356:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3383:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3386:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3389:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3391:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3394:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3416:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3418:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3420:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3422:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3424:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3427:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3430:16: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3433:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3435:16: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3438:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c: In function ‘samplesPerFeature’:
fabiac.c:3114:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3122:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3158:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3161:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3164:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3166:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3169:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3191:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3193:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3195:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3197:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3199:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3202:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3205:16: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3208:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3210:16: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:3213:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c: In function ‘spfabic’:
fabiac.c:1592:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:1600:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:1616:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:1621:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:1624:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:1626:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:1629:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:1641:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:1643:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:1645:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:1647:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:1649:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:1652:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:1657:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:1660:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:1662:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
fabiac.c:1665:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
gcc -std=gnu99 -shared -L/usr/local/lib -o fabia.so fabiac.o -L/home/biocbuild/bbs-2.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-2.12-bioc/meat/fabia.Rcheck/fabia/libs
** R
** demo
** inst
** preparing package for lazy loading
Creating a generic function for ‘summary’ from package ‘base’ in package ‘fabia’
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘fabia’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (fabia)