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BioC 2.12: CHECK report for easyRNASeq on petty

This page was generated on 2013-10-09 09:40:07 -0700 (Wed, 09 Oct 2013).

Package 196/671HostnameOS / ArchBUILDCHECKBUILD BIN
easyRNASeq 1.6.4
Nicolas Delhomme
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/easyRNASeq
Last Changed Rev: 80992 / Revision: 81334
Last Changed Date: 2013-09-30 19:16:03 -0700 (Mon, 30 Sep 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: easyRNASeq
Version: 1.6.4
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch easyRNASeq_1.6.4.tar.gz
StartedAt: 2013-10-08 22:14:08 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 22:22:33 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 504.4 seconds
RetCode: 0
Status:  OK 
CheckDir: easyRNASeq.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/easyRNASeq.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'easyRNASeq/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'easyRNASeq' version '1.6.4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'easyRNASeq' can be installed ... [50s/51s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [25s/25s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

easyRNASeq.Rcheck/00install.out:

* installing *source* package 'easyRNASeq' ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import 'coerce' when loading 'intervals'
Warning: replacing previous import 'initialize' when loading 'intervals'
Creating a generic function for 'print' from package 'base' in package 'easyRNASeq'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'coerce' when loading 'intervals'
Warning: replacing previous import 'initialize' when loading 'intervals'
* DONE (easyRNASeq)

easyRNASeq.Rcheck/easyRNASeq-Ex.timings:

nameusersystemelapsed
DESeq-edgeR-common-methods0.4400.0080.448
DESeq-methods0.0060.0030.009
GenomicRanges-methods0.0170.0050.023
IRanges-methods0.0180.0030.020
ShortRead-methods0.0360.0070.044
easyRNASeq-accessors0.0150.0040.020
easyRNASeq-annotation-methods0.0130.0040.018
easyRNASeq-class0.0130.0040.017
easyRNASeq-correction-methods0.0230.0080.032
easyRNASeq-count0.0180.0060.024
easyRNASeq-coverage-methods0.0140.0040.018
easyRNASeq-easyRNASeq0.0220.0070.029
easyRNASeq-island-methods0.0180.0050.023
easyRNASeq-package0.0180.0060.023
easyRNASeq-summarization-methods0.0160.0050.021
edgeR-methods0.0110.0040.016
genomeIntervals-methods0.0060.0020.009
parallel-methods0.0080.0030.011