BioC 2.12: CHECK report for easyRNASeq on george2

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/easyRNASeq.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘easyRNASeq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘easyRNASeq’ version ‘1.6.4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘easyRNASeq’ can be installed ... [51s/52s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [27s/28s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘easyRNASeq’ ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import ‘coerce’ when loading ‘intervals’
Warning: replacing previous import ‘initialize’ when loading ‘intervals’
Creating a generic function for ‘print’ from package ‘base’ in package ‘easyRNASeq’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import ‘coerce’ when loading ‘intervals’
Warning: replacing previous import ‘initialize’ when loading ‘intervals’
* DONE (easyRNASeq)

name	user	system	elapsed
DESeq-edgeR-common-methods	0.776	0.004	0.783
DESeq-methods	0.012	0.000	0.012
GenomicRanges-methods	0.028	0.000	0.031
IRanges-methods	0.020	0.000	0.021
ShortRead-methods	0.040	0.004	0.044
easyRNASeq-accessors	0.016	0.004	0.019
easyRNASeq-annotation-methods	0.016	0.000	0.020
easyRNASeq-class	0.020	0.000	0.018
easyRNASeq-correction-methods	0.028	0.000	0.031
easyRNASeq-count	0.02	0.00	0.02
easyRNASeq-coverage-methods	0.012	0.008	0.020
easyRNASeq-easyRNASeq	0.036	0.000	0.036
easyRNASeq-island-methods	0.024	0.000	0.025
easyRNASeq-package	0.028	0.000	0.026
easyRNASeq-summarization-methods	0.028	0.000	0.028
edgeR-methods	0.024	0.000	0.021
genomeIntervals-methods	0.012	0.000	0.010
parallel-methods	0.012	0.000	0.013

BioC 2.12: CHECK report for easyRNASeq on george2

Summary

Command output