Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 2.12: CHECK report for codelink on petty

This page was generated on 2013-10-09 09:39:30 -0700 (Wed, 09 Oct 2013).

Package 144/671HostnameOS / ArchBUILDCHECKBUILD BIN
codelink 1.28.1
Diego Diez
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/codelink
Last Changed Rev: 76051 / Revision: 81334
Last Changed Date: 2013-04-25 23:16:38 -0700 (Thu, 25 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: codelink
Version: 1.28.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch codelink_1.28.1.tar.gz
StartedAt: 2013-10-08 22:04:05 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 22:07:48 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 223.9 seconds
RetCode: 0
Status:  OK 
CheckDir: codelink.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/codelink.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'codelink/DESCRIPTION' ... OK
* this is package 'codelink' version '1.28.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'codelink' can be installed ... [32s/32s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [10s/10s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

codelink.Rcheck/00install.out:

* installing *source* package 'codelink' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'summary' from package 'base' in package 'codelink'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (codelink)

codelink.Rcheck/codelink-Ex.timings:

nameusersystemelapsed
Codelink-class0.0070.0020.009
CodelinkSet-class0.0070.0010.008
CodelinkSetUnique-class0.0070.0020.009
arrayNew0.0080.0020.010
as.matrix.Codelink0.0070.0010.008
averageProbes0.0070.0010.008
bkgdCorrect0.0070.0010.007
createWeights0.0070.0000.008
cutCV0.0040.0010.006
dim.Codelink0.0070.0010.009
imageCodelink0.0080.0010.009
logCodelink0.0080.0010.009
mergeArray0.0070.0010.009
na2false0.0070.0010.009
normalize0.0070.0020.009
normalize.loess0.0080.0010.008
plotCorrelation0.0080.0010.009
plotDensities0.0070.0010.008
plotMA0.0040.0010.004
readCodelink0.0110.0010.012
readHeader0.0060.0020.008
readHeaderXLS0.0070.0000.008
writeCodelink0.0070.0000.008