bumphunter 1.0.2 Rafael A. Irizarry
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/bumphunter | Last Changed Rev: 79115 / Revision: 81334 | Last Changed Date: 2013-07-30 13:04:13 -0700 (Tue, 30 Jul 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ ERROR ] | OK |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/bumphunter.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'bumphunter/DESCRIPTION' ... OK
* this is package 'bumphunter' version '1.0.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'bumphunter' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'bumphunter-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: smoother
> ### Title: Smooth genomic profiles
> ### Aliases: smoother
>
> ### ** Examples
>
> dat <- dummyData()
>
> ## loessByCluster
> smoothed <- smoother(y=dat$mat[,1], cluster=dat$cluster, smoothFunction=loessByCluster,
+ bpSpan = 1000, minNum=7, minInSpan=5, maxSpan=1)
Error in summary.connection(connection) : invalid connection
Calls: smoother ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Execution halted
** running examples for arch 'x64' ... ERROR
Running examples in 'bumphunter-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: smoother
> ### Title: Smooth genomic profiles
> ### Aliases: smoother
>
> ### ** Examples
>
> dat <- dummyData()
>
> ## loessByCluster
> smoothed <- smoother(y=dat$mat[,1], cluster=dat$cluster, smoothFunction=loessByCluster,
+ bpSpan = 1000, minNum=7, minInSpan=5, maxSpan=1)
Error in summary.connection(connection) : invalid connection
Calls: smoother ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Execution halted
install for i386
* installing *source* package 'bumphunter' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'bumphunter' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bumphunter' as bumphunter_1.0.2.zip
* DONE (bumphunter)