BioC 2.12: CHECK report for Icens on moscato2

Package: Icens

Version: 1.32.0

Command: rm -rf Icens.buildbin-libdir && mkdir Icens.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Icens.buildbin-libdir Icens_1.32.0.tar.gz >Icens-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=Icens.buildbin-libdir --install="check:Icens-install.out" --force-multiarch --no-vignettes --timings Icens_1.32.0.tar.gz && mv Icens.buildbin-libdir/* Icens.Rcheck/ && rmdir Icens.buildbin-libdir

StartedAt: 2013-10-09 02:40:46 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 02:42:09 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 82.5 seconds

RetCode: 0

Status:  OK

CheckDir: Icens.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/Icens.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Icens/DESCRIPTION' ... OK
* this is package 'Icens' version '1.32.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Icens' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
VEMICMmac: no visible binding for global variable 'EMstep'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [21s] OK
Examples with CPU or elapsed time > 5s
     user system elapsed
ISDM 13.2      0    13.2
** running examples for arch 'x64' ... [26s] OK
Examples with CPU or elapsed time > 5s
      user system elapsed
ISDM 14.39      0   14.38
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'testbv.R' [1s]
  Comparing 'testbv.Rout' to 'testbv.Rout.save' ...117c117
<  [6] 1.461001e+00 1.207129e+00 1.000000e+00 4.748624e-01 4.639536e-17
---
>  [6]  1.461001e+00  1.207129e+00  1.000000e+00  4.748624e-01 -2.480201e-16
 [2s] OK
** running tests for arch 'x64'
  Running 'testbv.R' [1s]
  Comparing 'testbv.Rout' to 'testbv.Rout.save' ...117c117
<  [6]  1.461001e+00  1.207129e+00  1.000000e+00  4.748624e-01 -2.640501e-16
---
>  [6]  1.461001e+00  1.207129e+00  1.000000e+00  4.748624e-01 -2.480201e-16
 [1s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.12-bioc/meat/Icens.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'Icens' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'Icens' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Icens' as Icens_1.32.0.zip
* DONE (Icens)