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BioC 2.12: BUILD BIN report for DESeq2 on moscato2

This page was generated on 2013-10-09 09:39:17 -0700 (Wed, 09 Oct 2013).

Package 177/671HostnameOS / ArchBUILDCHECKBUILD BIN
DESeq2 1.0.19
Michael Love
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/DESeq2
Last Changed Rev: 79439 / Revision: 81334
Last Changed Date: 2013-08-14 05:41:28 -0700 (Wed, 14 Aug 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS [ OK ]
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: DESeq2
Version: 1.0.19
Command: rm -rf DESeq2.buildbin-libdir && mkdir DESeq2.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DESeq2.buildbin-libdir DESeq2_1.0.19.tar.gz
StartedAt: 2013-10-09 05:02:25 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 05:05:25 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 180.3 seconds
RetCode: 0
Status:  OK  
PackageFile: DESeq2_1.0.19.zip
PackageFileSize: 1.352 MiB

Command output


install for i386

* installing *source* package 'DESeq2' ...
** libs
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG    -I"E:/biocbld/bbs-2.12-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-2.12-bioc/R/library/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c DESeq2.cpp -o DESeq2.o
DESeq2.cpp: In function 'SEXPREC* fitDisp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
DESeq2.cpp:212:26: warning: 'change' may be used uninitialized in this function [-Wuninitialized]
g++ -m32 -shared -s -static-libgcc -o DESeq2.dll tmp.def DESeq2.o E:/biocbld/bbs-2.12-bioc/R/library/Rcpp/lib/i386/libRcpp.a -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lRlapack -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lRblas -lgfortran -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/DESeq2.buildbin-libdir/DESeq2/libs/i386
** R
** inst
** preparing package for lazy loading
Warning: package 'Rcpp' was built under R version 3.0.2
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: package 'Rcpp' was built under R version 3.0.2

install for x64

* installing *source* package 'DESeq2' ...
** libs
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG    -I"E:/biocbld/bbs-2.12-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-2.12-bioc/R/library/RcppArmadillo/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c DESeq2.cpp -o DESeq2.o
DESeq2.cpp: In function 'SEXPREC* fitDisp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
DESeq2.cpp:212:26: warning: 'change' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -shared -s -static-libgcc -o DESeq2.dll tmp.def DESeq2.o E:/biocbld/bbs-2.12-bioc/R/library/Rcpp/lib/x64/libRcpp.a -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lRlapack -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lRblas -lgfortran -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/DESeq2.buildbin-libdir/DESeq2/libs/x64
** testing if installed package can be loaded
Warning: package 'Rcpp' was built under R version 3.0.2
* MD5 sums
packaged installation of 'DESeq2' as DESeq2_1.0.19.zip
* DONE (DESeq2)