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yeastGSData 0.1.9
R. Gentleman
Snapshot Date: 2013-03-24 09:15:27 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/yeastGSData
Last Changed Rev: 2168 / Revision: 2286
Last Changed Date: 2012-10-01 10:57:19 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: yeastGSData
Version: 0.1.9
Command: rm -rf yeastGSData.buildbin-libdir && mkdir yeastGSData.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=yeastGSData.buildbin-libdir yeastGSData_0.1.9.tar.gz >yeastGSData-install.out 2>&1 && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD check --library=yeastGSData.buildbin-libdir --install="check:yeastGSData-install.out" --force-multiarch --no-vignettes --timings yeastGSData_0.1.9.tar.gz && mv yeastGSData.buildbin-libdir/* yeastGSData.Rcheck/ && rmdir yeastGSData.buildbin-libdir
StartedAt: 2013-03-24 12:55:47 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 13:00:12 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 265.2 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: yeastGSData.Rcheck
Warnings: 1

Command output

* using log directory 'D:/biocbld/bbs-2.11-data-experiment/meat/yeastGSData.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'yeastGSData/DESCRIPTION' ... OK
* this is package 'yeastGSData' version '0.1.9'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'yeastGSData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 65.2Mb
  sub-directories of 1Mb or more:
    extdata  64.2Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: BayesFactorNGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorNGS.Rd:26-27: Dropping empty section \references
prepare_Rd: BayesFactorPGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorPGS.Rd:26-27: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                     old_size new_size compress
  BayesFactorNGS.rda     46Kb     18Kb       xz
  BayesFactorPGS.rda     70Kb     32Kb       xz
  MIPSGS.rda             15Kb      9Kb       xz
  Mpact.rda             199Kb    136Kb    bzip2
  NEGGS.rda             600Kb     40Kb       xz
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
      user system elapsed
NEGGS 6.67   0.11    6.78
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.11-data-experiment/meat/yeastGSData.Rcheck/00check.log'
for details.

yeastGSData.Rcheck/00install.out:


install for i386

* installing *source* package 'yeastGSData' ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'yeastGSData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'yeastGSData' as yeastGSData_0.1.9.zip

* DONE (yeastGSData)