Package: ind1KG

Version: 0.1.14

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ind1KG_0.1.14.tar.gz

StartedAt: 2013-03-24 12:16:12 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 12:19:39 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 207.4 seconds

RetCode: 0

Status:  OK

CheckDir: ind1KG.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.11-data-experiment/meat/ind1KG.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ind1KG/DESCRIPTION' ... OK
* this is package 'ind1KG' version '0.1.14'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'ind1KG' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 181.4Mb
  sub-directories of 1Mb or more:
    data     149.8Mb
    pileups   30.5Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
        user system elapsed
n240  24.201  0.979  25.739
c6snp  7.452  0.279   7.748
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.11-data-experiment/meat/ind1KG.Rcheck/00check.log'
for details.

* installing *source* package 'ind1KG' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
   'ind1KG.Rnw' 
   'nov09rv.Rnw' 
** testing if installed package can be loaded

* DONE (ind1KG)

name	user	system	elapsed
c6snp	7.452	0.279	7.748
gw6c6.snp240	0.293	0.016	0.310
n240	24.201	0.979	25.739
oregdf	0.004	0.001	0.005
pup240_500k	2.473	0.151	2.638
pup240_disc	0.086	0.005	0.091
rsgdf	0.006	0.001	0.007
yri240_6	0.530	0.017	0.833