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hgu2beta7 1.2.7
Bioconductor Package Maintainer
Snapshot Date: 2013-03-24 09:15:27 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/hgu2beta7
Last Changed Rev: 2168 / Revision: 2286
Last Changed Date: 2012-10-01 10:57:19 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 

Summary

Package: hgu2beta7
Version: 1.2.7
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch hgu2beta7_1.2.7.tar.gz
StartedAt: 2013-03-24 12:15:27 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 12:16:21 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 53.7 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: hgu2beta7.Rcheck
Warnings: 3

Command output

* using log directory '/Users/biocbuild/bbs-2.11-data-experiment/meat/hgu2beta7.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'hgu2beta7/DESCRIPTION' ... OK
* this is package 'hgu2beta7' version '1.2.7'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'hgu2beta7' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.0Mb
  sub-directories of 1Mb or more:
    data   6.9Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
'library' or 'require' call not declared from: 'annotate'
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  'Rdata.rdb' 'Rdata.rds' 'Rdata.rdx'
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There were 3 warnings.
NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.11-data-experiment/meat/hgu2beta7.Rcheck/00check.log'
for details.

hgu2beta7.Rcheck/00install.out:

* installing *source* package 'hgu2beta7' ...
** R
** data
**  moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (hgu2beta7)

hgu2beta7.Rcheck/hgu2beta7-Ex.timings:

nameusersystemelapsed
hgu2beta7ACCNUM0.3660.0370.402
hgu2beta7CHR0.1490.0070.156
hgu2beta7CHRLENGTHS000
hgu2beta7CHRLOC0.3010.0090.309
hgu2beta7ENZYME0.1420.0070.149
hgu2beta7ENZYME2PROBE0.0060.0000.006
hgu2beta7GENENAME0.2960.0100.306
hgu2beta7GO2.1360.0802.220
hgu2beta7GO2ALLPROBES0.5710.0340.606
hgu2beta7GO2PROBE0.0780.0100.088
hgu2beta7GRIF0.1420.0090.151
hgu2beta7LOCUSID0.1450.0090.154
hgu2beta7MAP0.1350.0050.139
hgu2beta7OMIM0.1160.0040.119
hgu2beta7ORGANISM000
hgu2beta7PATH0.1540.0050.160
hgu2beta7PATH2PROBE0.0040.0000.006
hgu2beta7PMID0.3690.0130.430
hgu2beta7PMID2PROBE1.5060.0281.540
hgu2beta7REFSEQ0.7150.0140.731
hgu2beta7SUMFUNC0.3210.0190.344
hgu2beta7SYMBOL0.6430.0060.655
hgu2beta7UNIGENE0.2660.0080.279