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hgu2beta7 1.2.7
Bioconductor Package Maintainer
Snapshot Date: 2013-03-24 09:15:27 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/hgu2beta7
Last Changed Rev: 2168 / Revision: 2286
Last Changed Date: 2012-10-01 10:57:19 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK [ WARNINGS ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: hgu2beta7
Version: 1.2.7
Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings hgu2beta7_1.2.7.tar.gz
StartedAt: 2013-03-24 12:41:49 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 12:42:39 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 50.1 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: hgu2beta7.Rcheck
Warnings: 3

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/hgu2beta7.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hgu2beta7/DESCRIPTION’ ... OK
* this is package ‘hgu2beta7’ version ‘1.2.7’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘hgu2beta7’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.0Mb
  sub-directories of 1Mb or more:
    data   6.9Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory ‘data’ contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
‘library’ or ‘require’ call not declared from: ‘annotate’
* checking contents of ‘data’ directory ... WARNING
Files not of a type allowed in a ‘data’ directory:
  ‘Rdata.rdb’ ‘Rdata.rds’ ‘Rdata.rdx’
Please use e.g. ‘inst/extdata’ for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There were 3 warnings.
NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/hgu2beta7.Rcheck/00check.log’
for details.

hgu2beta7.Rcheck/00install.out:

* installing *source* package ‘hgu2beta7’ ...
** R
** data
**  moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (hgu2beta7)

hgu2beta7.Rcheck/hgu2beta7-Ex.timings:

nameusersystemelapsed
hgu2beta7ACCNUM0.4880.0120.497
hgu2beta7CHR0.1800.0000.181
hgu2beta7CHRLENGTHS0.0000.0000.001
hgu2beta7CHRLOC0.3880.0040.393
hgu2beta7ENZYME0.1600.0040.164
hgu2beta7ENZYME2PROBE0.0040.0040.005
hgu2beta7GENENAME0.3200.0000.319
hgu2beta7GO2.6480.0882.742
hgu2beta7GO2ALLPROBES0.5240.0160.540
hgu2beta7GO2PROBE0.3160.0000.316
hgu2beta7GRIF0.1200.0000.119
hgu2beta7LOCUSID0.1440.0040.148
hgu2beta7MAP0.1480.0000.152
hgu2beta7OMIM0.1520.0040.160
hgu2beta7ORGANISM000
hgu2beta7PATH0.1400.0000.141
hgu2beta7PATH2PROBE0.0040.0000.004
hgu2beta7PMID0.2320.0040.236
hgu2beta7PMID2PROBE1.7320.0041.737
hgu2beta7REFSEQ0.7640.0000.764
hgu2beta7SUMFUNC0.2720.0120.288
hgu2beta7SYMBOL0.7200.0000.719
hgu2beta7UNIGENE0.2520.0000.250