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Package 118/133HostnameOS / ArchBUILDCHECKBUILD BIN
SpikeInSubset 1.2.12
Rafael A. Irizarry
Snapshot Date: 2013-03-24 09:15:27 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/SpikeInSubset
Last Changed Rev: 2168 / Revision: 2286
Last Changed Date: 2012-10-01 10:57:19 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 

Summary

Package: SpikeInSubset
Version: 1.2.12
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch SpikeInSubset_1.2.12.tar.gz
StartedAt: 2013-03-24 12:33:17 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 12:36:05 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 168.8 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: SpikeInSubset.Rcheck
Warnings: 3

Command output

* using log directory '/Users/biocbuild/bbs-2.11-data-experiment/meat/SpikeInSubset.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'SpikeInSubset/DESCRIPTION' ... OK
* this is package 'SpikeInSubset' version '1.2.12'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'SpikeInSubset' can be installed ... WARNING
Found the following significant warnings:
  Warning: /Users/biocbuild/bbs-2.11-data-experiment/meat/SpikeInSubset.Rcheck/00_pkg_src/SpikeInSubset/man/xhyb.Rd: docType 'instance' is unrecognized
See '/Users/biocbuild/bbs-2.11-data-experiment/meat/SpikeInSubset.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
  installed size is 20.5Mb
  sub-directories of 1Mb or more:
    data  20.4Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
prepare_Rd: xhyb.Rd: docType 'instance' is unrecognized
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                           old_size new_size compress
  hgu133a.spikein.xhyb.rda     12Kb      2Kb     gzip
  mas133.rda                  2.2Mb   1010Kb       xz
  mas95.rda                   1.3Mb    573Kb       xz
  rma133.rda                  2.2Mb    894Kb       xz
  rma95.rda                   1.3Mb    522Kb       xz
  spikein133.rda              7.3Mb    4.4Mb       xz
  spikein95.rda               6.1Mb    3.5Mb       xz
* checking examples ... NONE
* checking PDF version of manual ... OK

WARNING: There were 3 warnings.
NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.11-data-experiment/meat/SpikeInSubset.Rcheck/00check.log'
for details.

SpikeInSubset.Rcheck/00install.out:

* installing *source* package 'SpikeInSubset' ...
** R
** data
** preparing package for lazy loading
** help
Warning: /Users/biocbuild/bbs-2.11-data-experiment/meat/SpikeInSubset.Rcheck/00_pkg_src/SpikeInSubset/man/xhyb.Rd: docType 'instance' is unrecognized
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (SpikeInSubset)