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PWMEnrich.Dmelanogaster.background 2.0.0
Robert Stojnic
Snapshot Date: 2013-03-24 09:15:27 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/PWMEnrich.Dmelanogaster.background
Last Changed Rev: 2235 / Revision: 2286
Last Changed Date: 2013-03-08 10:19:01 -0800 (Fri, 08 Mar 2013)
lamb1 Linux (openSUSE 12.1) / x86_64  OK [ ERROR ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  ERROR  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  ERROR  OK 

Summary

Package: PWMEnrich.Dmelanogaster.background
Version: 2.0.0
Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings PWMEnrich.Dmelanogaster.background_2.0.0.tar.gz
StartedAt: 2013-03-24 13:11:52 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 13:12:49 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 56.6 seconds
RetCode: 1
Status:  ERROR 
CheckDir: PWMEnrich.Dmelanogaster.background.Rcheck
Warnings: NA

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/PWMEnrich.Dmelanogaster.background.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PWMEnrich.Dmelanogaster.background/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PWMEnrich.Dmelanogaster.background’ version ‘2.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘PWMEnrich.Dmelanogaster.background’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 57.1Mb
  sub-directories of 1Mb or more:
    data  57.0Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: package needs dependence on R (>= 2.10)
* checking examples ... ERROR
Running examples in ‘PWMEnrich.Dmelanogaster.background-Ex.R’ failed
The error most likely occurred in:

> assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: PWMEnrich.Dmelanogaster.background-package
> ### Title: PWMEnrich.Dmelanogaster.background package overview
> ### Aliases: PWMEnrich.Dmelanogaster.background-package
> ###   PWMEnrich.Dmelanogaster.background MotifDb.Dmel.PFM MotifDb.Dmel
> ###   PWMLogn.dm3.MotifDb.Dmel PWMCutoff4.dm3.MotifDb.Dmel
> ###   PWMCutoff5.dm3.MotifDb.Dmel PWMGEV.dm3.MotifDb.Dmel
> ###   PWMPvalueCutoff1e2.dm3.MotifDb.Dmel
> ###   PWMPvalueCutoff1e3.dm3.MotifDb.Dmel
> ###   PWMPvalueCutoff1e4.dm3.MotifDb.Dmel
> ### Keywords: package
> 
> ### ** Examples
> 
> 	data(PWMLogn.dm3.MotifDb.Dmel)
> 	
> 	res = motifEnrichment(DNAString("TGCATCAAGTGTGTAGTGCGATGAATGC"), PWMLogn.dm3.MotifDb.Dmel)
Scanning sequence 1 / 1
> 	
> 	head(motifRankingForGroup(res))
Error in head(motifRankingForGroup(res)) : 
  error in evaluating the argument 'x' in selecting a method for function 'head': Error: could not find function "motifRankingForGroup"
Execution halted

PWMEnrich.Dmelanogaster.background.Rcheck/00install.out:

* installing *source* package ‘PWMEnrich.Dmelanogaster.background’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (PWMEnrich.Dmelanogaster.background)

PWMEnrich.Dmelanogaster.background.Rcheck/PWMEnrich.Dmelanogaster.background-Ex.timings:

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