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GSVAdata 0.99.9
Robert Castelo
Snapshot Date: 2013-03-24 09:15:27 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/GSVAdata
Last Changed Rev: 2168 / Revision: 2286
Last Changed Date: 2012-10-01 10:57:19 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GSVAdata
Version: 0.99.9
Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings GSVAdata_0.99.9.tar.gz
StartedAt: 2013-03-24 12:34:26 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 12:35:43 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 76.6 seconds
RetCode: 0
Status:  OK 
CheckDir: GSVAdata.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/GSVAdata.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GSVAdata/DESCRIPTION’ ... OK
* this is package ‘GSVAdata’ version ‘0.99.9’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘GSVAdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 12.8Mb
  sub-directories of 1Mb or more:
    data  12.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
c2BroadSets 6.208  0.228   6.445
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/GSVAdata.Rcheck/00check.log’
for details.

GSVAdata.Rcheck/00install.out:

* installing *source* package ‘GSVAdata’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (GSVAdata)

GSVAdata.Rcheck/GSVAdata-Ex.timings:

nameusersystemelapsed
annotEntrez2202120.0560.0000.055
brainTxDbSets0.0080.0000.005
c2BroadSets6.2080.2286.445
commonPickrellHuang0.4240.0280.464
gbm_VerhaakEtAl0.4600.2560.721
genderGenesEntrez0.0040.0000.002
leukemia0.2720.0160.289