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Package 337/609HostnameOS / ArchBUILDCHECKBUILD BIN
lmdme 1.0.0
Cristobal Fresno
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/lmdme
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: lmdme
Version: 1.0.0
Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings lmdme_1.0.0.tar.gz
StartedAt: 2013-03-25 02:37:43 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 02:40:14 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 151.4 seconds
RetCode: 0
Status:  OK 
CheckDir: lmdme.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/lmdme.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘lmdme/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘lmdme’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘lmdme’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
permutation,formula-data.frame-data.frame: no visible binding for
  global variable ‘mclapply’
permutation,formula-data.frame-data.frame: no visible global function
  definition for ‘detectCores’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
lmDME-permutation   22.361  1.304  18.087
lmDME-biplot        12.500  0.204  12.799
lmDME-decomposition 11.601  0.172  11.887
lmDME-padjust       11.352  0.008  11.552
lmDME-leverage      10.984  0.060  11.303
lmDME-printshow     10.117  0.096  10.284
lmDME-loadingplot   10.125  0.068  10.334
lmDME-screeplot     10.077  0.072  10.373
lmDME-lmdme          9.537  0.136  10.389
lmDME-getters        9.473  0.056   9.838
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/lmdme.Rcheck/00check.log’
for details.

lmdme.Rcheck/00install.out:

* installing *source* package ‘lmdme’ ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘fitted.values’ from package ‘stats’ in package ‘lmdme’
Creating a generic function for ‘fitted’ from package ‘stats’ in package ‘lmdme’
Creating a generic function for ‘coef’ from package ‘stats’ in package ‘lmdme’
Creating a generic function for ‘coefficients’ from package ‘stats’ in package ‘lmdme’
Creating a generic function for ‘resid’ from package ‘stats’ in package ‘lmdme’
Creating a generic function for ‘residuals’ from package ‘stats’ in package ‘lmdme’
Creating a generic function for ‘print’ from package ‘base’ in package ‘lmdme’
Creating a generic function for ‘summary’ from package ‘base’ in package ‘lmdme’
Creating a new generic function for ‘p.adjust’ in package ‘lmdme’
Creating a generic function for ‘biplot’ from package ‘stats’ in package ‘lmdme’
Creating a generic function for ‘screeplot’ from package ‘stats’ in package ‘lmdme’
Creating a generic function for ‘loadingplot’ from package ‘pls’ in package ‘lmdme’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘lmdme-vignette.Rnw’ using ‘latin1’ 
** testing if installed package can be loaded

* DONE (lmdme)

lmdme.Rcheck/lmdme-Ex.timings:

nameusersystemelapsed
lmDME-biplot12.500 0.20412.799
lmDME-decomposition11.601 0.17211.887
lmDME-getters9.4730.0569.838
lmDME-leverage10.984 0.06011.303
lmDME-lmdme 9.537 0.13610.389
lmDME-loadingplot10.125 0.06810.334
lmDME-padjust11.352 0.00811.552
lmDME-permutation22.361 1.30418.087
lmDME-printshow10.117 0.09610.284
lmDME-screeplot10.077 0.07210.373