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Package 178/609HostnameOS / ArchBUILDCHECKBUILD BIN
easyRNASeq 1.4.2
Nicolas Delhomme
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/easyRNASeq
Last Changed Rev: 70582 / Revision: 74773
Last Changed Date: 2012-10-16 01:40:45 -0700 (Tue, 16 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: easyRNASeq
Version: 1.4.2
Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings easyRNASeq_1.4.2.tar.gz
StartedAt: 2013-03-25 00:48:08 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 00:54:00 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 352.2 seconds
RetCode: 0
Status:  OK 
CheckDir: easyRNASeq.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/easyRNASeq.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘easyRNASeq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘easyRNASeq’ version ‘1.4.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘easyRNASeq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

easyRNASeq.Rcheck/00install.out:

* installing *source* package ‘easyRNASeq’ ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import ‘coerce’ when loading ‘intervals’
Warning: replacing previous import ‘initialize’ when loading ‘intervals’
Creating a generic function for ‘print’ from package ‘base’ in package ‘easyRNASeq’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘easyRNASeq.Rnw’ 
** testing if installed package can be loaded
Warning: replacing previous import ‘coerce’ when loading ‘intervals’
Warning: replacing previous import ‘initialize’ when loading ‘intervals’

* DONE (easyRNASeq)

easyRNASeq.Rcheck/easyRNASeq-Ex.timings:

nameusersystemelapsed
DESeq-edgeR-common-methods000
DESeq-methods000
GenomicRanges-methods000
IRanges-methods0.0000.0000.001
ShortRead-methods000
easyRNASeq-accessors0.0040.0000.003
easyRNASeq-annotation-methods0.0040.0000.002
easyRNASeq-class0.0040.0000.001
easyRNASeq-correction-methods0.0000.0000.001
easyRNASeq-count000
easyRNASeq-coverage-methods000
easyRNASeq-easyRNASeq0.0000.0000.001
easyRNASeq-island-methods000
easyRNASeq-package000
easyRNASeq-summarization-methods000
edgeR-methods000
genomeIntervals-methods000
parallel-methods0.0000.0000.002