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Package 78/609HostnameOS / ArchBUILDCHECKBUILD BIN
birta 1.2.0
Benedikt Zacher
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/birta
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: birta
Version: 1.2.0
Command: rm -rf birta.buildbin-libdir && mkdir birta.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=birta.buildbin-libdir birta_1.2.0.tar.gz
StartedAt: 2013-03-25 03:46:56 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 03:47:26 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 29.8 seconds
RetCode: 0
Status:  OK  
PackageFile: birta_1.2.0.zip
PackageFileSize: 830.2 KiB

Command output


install for i386

* installing *source* package 'birta' ...
** libs
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c BayesNetwork.cpp -o BayesNetwork.o
BayesNetwork.cpp: In constructor 'BayesNetwork::BayesNetwork(int, int, int, char**, char**, char**, int**, double***, double***, int, int, std::list<int>*, std::list<int>*, std::list<int>*, std::list<int>*, double, double, double, double*, double*, double**, double**, double*, double*, int, double**, int, std::list<int>*, std::list<int>*, double, double, int, int, double, double, double, int**, int**, double***, int, double*, double*, double*, double, double, int**)':
BayesNetwork.cpp:237:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:241:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp: In destructor 'virtual BayesNetwork::˜BayesNetwork()':
BayesNetwork.cpp:250:10: warning: unused variable 'j' [-Wunused-variable]
BayesNetwork.cpp: In member function 'virtual double* BayesNetwork::MCMC(long int, long int, int)':
BayesNetwork.cpp:868:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:963:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:1044:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:1140:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:740:92: warning: 'mu0' may be used uninitialized in this function [-Wuninitialized]
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c BayesNetworkNC.cpp -o BayesNetworkNC.o
BayesNetworkNC.cpp: In member function 'virtual double* BayesNetworkNC::MCMC(long int, long int, int)':
BayesNetworkNC.cpp:465:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetworkNC.cpp:560:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetworkNC.cpp:640:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetworkNC.cpp:735:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c getStates.cpp -o getStates.o
g++ -m32 -shared -s -static-libgcc -o birta.dll tmp.def BayesNetwork.o BayesNetworkNC.o getStates.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.11-bioc/meat/birta.buildbin-libdir/birta/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'birta.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'birta' ...
** libs
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c BayesNetwork.cpp -o BayesNetwork.o
BayesNetwork.cpp: In constructor 'BayesNetwork::BayesNetwork(int, int, int, char**, char**, char**, int**, double***, double***, int, int, std::list<int>*, std::list<int>*, std::list<int>*, std::list<int>*, double, double, double, double*, double*, double**, double**, double*, double*, int, double**, int, std::list<int>*, std::list<int>*, double, double, int, int, double, double, double, int**, int**, double***, int, double*, double*, double*, double, double, int**)':
BayesNetwork.cpp:237:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:241:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp: In destructor 'virtual BayesNetwork::˜BayesNetwork()':
BayesNetwork.cpp:250:10: warning: unused variable 'j' [-Wunused-variable]
BayesNetwork.cpp: In member function 'virtual double* BayesNetwork::MCMC(long int, long int, int)':
BayesNetwork.cpp:868:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:963:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:1044:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:1140:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:740:92: warning: 'mu0' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c BayesNetworkNC.cpp -o BayesNetworkNC.o
BayesNetworkNC.cpp: In member function 'virtual double* BayesNetworkNC::MCMC(long int, long int, int)':
BayesNetworkNC.cpp:465:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetworkNC.cpp:560:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetworkNC.cpp:640:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetworkNC.cpp:735:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c getStates.cpp -o getStates.o
g++ -m64 -shared -s -static-libgcc -o birta.dll tmp.def BayesNetwork.o BayesNetworkNC.o getStates.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.11-bioc/meat/birta.buildbin-libdir/birta/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'birta' as birta_1.2.0.zip

* DONE (birta)