bigmemoryExtras 1.0.0
Peter M. Haverty
| Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/bigmemoryExtras | | Last Changed Rev: 70067 / Revision: 74773 | | Last Changed Date: 2012-10-01 21:52:18 -0700 (Mon, 01 Oct 2012) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | N O T S U P P O R T E D |
| perceval | Mac OS X Leopard (10.5.8) / i386 | OK | [ OK ] | OK |
* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/bigmemoryExtras.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'bigmemoryExtras/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'bigmemoryExtras' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'bigmemoryExtras' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
Running 'prove.R'
Comparing 'prove.Rout' to 'prove.Rout.save' ...3c3
< > require("bigmemoryExtras") || stop("unable to load bigmemoryExtras package")
---
> > require("BigMatrix") || stop("unable to load BigMatrix package")
5,6c5,6
< bigmemory >= 4.0 is a major revision since 3.1.2; please see packages
< biganalytics and and bigtabulate and http://www.bigmemory.org for more information.
---
> bigmemory >= 4.0 is a major revision since 3.1.2; please see package
> biganalytics and http://www.bigmemory.org for more information.
9,16c9,16
< > bigmemoryExtras:::.test()
< Attaching to on-disk data: /private/tmp/Rtmps1BgEz/file1013a68ab22ae.desc.rds ...
< Attaching to on-disk data: /private/tmp/Rtmps1BgEz/file1013a725bdf1a.desc.rds ...
< Attaching to on-disk data: /private/tmp/Rtmps1BgEz/file1013a725bdf1a.desc.rds ...
< Attaching to on-disk data: /private/tmp/Rtmps1BgEz/file1013a725bdf1a.desc.rds ...
< Attaching to on-disk data: /private/tmp/Rtmps1BgEz/file1013a725bdf1a.desc.rds ...
< Attaching to on-disk data: /private/tmp/Rtmps1BgEz/bigmat/ds.desc.rds ...
< Attaching to on-disk data: /private/tmp/Rtmps1BgEz/bigmat/ds.desc.rds ...
---
> > BigMatrix:::.test()
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file508557463e5e.desc.rds ...
> Note: no visible binding for global variable 'description'
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
> Attaching to on-disk data: /tmp/RtmpwTXGpU/file50854899071f.desc.rds ...
39c39
< RUNIT TEST PROTOCOL -- Sun Mar 24 22:42:53 2013
---
> RUNIT TEST PROTOCOL -- Mon Sep 10 15:44:56 2012
47c47
< bigmemoryExtras RUnit Tests - 10 test functions, 0 errors, 0 failures
---
> BigMatrix RUnit Tests - 10 test functions, 0 errors, 0 failures
51,53d50
< Warning message:
< In attach.resource(obj, ...) :
< big.matrix object could only be opened read-only.
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
* installing *source* package 'bigmemoryExtras' ...
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'levels' from package 'base' in package 'bigmemoryExtras'
Creating a generic function for 'nlevels' from package 'base' in package 'bigmemoryExtras'
Note: no visible binding for '<<-' assignment to '.->.bm'
Note: no visible binding for '<<-' assignment to '.->descpath'
Note: no visible binding for '<<-' assignment to '.->.bm'
Note: no visible binding for '<<-' assignment to '.->descpath'
Note: no visible binding for '<<-' assignment to '.->levels'
** help
*** installing help indices
** building package indices
** installing vignettes
'bigmemoryExtras.Rnw'
** testing if installed package can be loaded
* DONE (bigmemoryExtras)