| Back to the "Multiple platform build/check report" | A B C D E F G H [I] J K L M N O P Q R S T U V W X Y Z |
| Package 307/609 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
| IdMappingAnalysis 1.2.1 Alex Lisovich
| lamb1 | Linux (openSUSE 12.1) / x86_64 | OK | [ OK ] | |||||
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | |||||
| perceval | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
| Package: IdMappingAnalysis |
| Version: 1.2.1 |
| Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings IdMappingAnalysis_1.2.1.tar.gz |
| StartedAt: 2013-03-25 02:17:44 -0700 (Mon, 25 Mar 2013) |
| EndedAt: 2013-03-25 02:19:19 -0700 (Mon, 25 Mar 2013) |
| EllapsedTime: 95.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: IdMappingAnalysis.Rcheck |
| Warnings: 0 |
* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/IdMappingAnalysis.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IdMappingAnalysis/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IdMappingAnalysis’ version ‘1.2.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘IdMappingAnalysis’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
getBootstrap.JointUniquePairs 8.117 0.016 8.162
Bootstrap 7.468 0.024 7.726
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
IdMappingAnalysis.Rcheck/00install.out:
* installing *source* package ‘IdMappingAnalysis’ ... ** R ** data ** moving datasets to lazyload DB ** demo ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘IdMappingAnalysis.Rnw’ using ‘latin-9’ ** testing if installed package can be loaded * DONE (IdMappingAnalysis)
IdMappingAnalysis.Rcheck/IdMappingAnalysis-Ex.timings:
| name | user | system | elapsed | |
| 000-LB-.IdMapBase | 0.568 | 0.028 | 0.625 | |
| Bootstrap | 7.468 | 0.024 | 7.726 | |
| Corr | 0.532 | 0.004 | 0.537 | |
| CorrData | 0.264 | 0.000 | 0.267 | |
| CsvList.merge.Misc | 0.000 | 0.000 | 0.002 | |
| IdMap | 0.008 | 0.000 | 0.006 | |
| IdMapBase | 0.000 | 0.000 | 0.001 | |
| IdMapCounts | 0.520 | 0.000 | 0.515 | |
| IdMapDiff | 0.636 | 0.004 | 0.640 | |
| IdMapDiffCounts | 0.476 | 0.000 | 0.476 | |
| JointIdMap | 0.080 | 0.004 | 0.086 | |
| JointUniquePairs | 0.844 | 0.004 | 0.973 | |
| Mixture | 0.344 | 0.000 | 0.345 | |
| UniquePairs | 0.000 | 0.004 | 0.002 | |
| aligned.IdMapBase | 0.004 | 0.004 | 0.007 | |
| as.IdMap.UniquePairs | 0.052 | 0.000 | 0.053 | |
| as.MultiSet.CorrData | 0.888 | 0.020 | 0.910 | |
| as.UniquePairs.IdMap | 0.020 | 0.000 | 0.021 | |
| as.data.frame.IdMapBase | 0.188 | 0.000 | 0.189 | |
| as.data.frame.JointIdMap | 0.056 | 0.000 | 0.057 | |
| as.list.IdMap | 0.012 | 0.000 | 0.013 | |
| boxplot.JointUniquePairs | 0.072 | 0.000 | 0.072 | |
| byColNames.Subset | 0.008 | 0.000 | 0.008 | |
| byColumn.Subset | 0.008 | 0.000 | 0.007 | |
| byRow.Subset | 0.016 | 0.000 | 0.015 | |
| byRowNames.Subset | 0.008 | 0.000 | 0.007 | |
| clust.Mixture | 0.000 | 0.000 | 0.001 | |
| copy.Display | 0 | 0 | 0 | |
| corr.boxplot.JointUniquePairs | 0.096 | 0.000 | 0.097 | |
| corr.plot.JointUniquePairs | 0.056 | 0.004 | 0.058 | |
| create.Display | 0 | 0 | 0 | |
| create.UniquePairs | 0.240 | 0.000 | 0.239 | |
| diffCounts.plot.JointIdMap | 0.540 | 0.000 | 0.537 | |
| dim.IdMapBase | 0.008 | 0.004 | 0.012 | |
| dimnames.IdMapBase | 0.024 | 0.000 | 0.022 | |
| do.glm.JointUniquePairs | 0.028 | 0.000 | 0.031 | |
| ecdf.plot.JointIdMap | 0.280 | 0.000 | 0.282 | |
| equals.UniquePairs | 0.040 | 0.000 | 0.038 | |
| fisherTransform.DataFilter | 0 | 0 | 0 | |
| fisherTransformInverse.DataFilter | 0 | 0 | 0 | |
| fisherTransformJacobean.DataFilter | 0.000 | 0.000 | 0.001 | |
| getBootstrap.JointUniquePairs | 8.117 | 0.016 | 8.162 | |
| getCompoundEvents.IdMapDiffCounts | 0.432 | 0.004 | 0.435 | |
| getCompoundGroups.IdMapDiffCounts | 0.472 | 0.004 | 0.476 | |
| getCorr.JointUniquePairs | 0.064 | 0.000 | 0.066 | |
| getCorrData.JointUniquePairs | 0.440 | 0.004 | 0.443 | |
| getCorrDataFrame.JointUniquePairs | 0.024 | 0.000 | 0.025 | |
| getCounts.IdMap | 0.028 | 0.000 | 0.027 | |
| getCounts.JointIdMap | 0.212 | 0.000 | 0.211 | |
| getData.Corr | 0 | 0 | 0 | |
| getData.Mixture | 0.004 | 0.000 | 0.001 | |
| getDiff.JointIdMap | 0.300 | 0.000 | 0.301 | |
| getExperimentSet.CorrData | 0.152 | 0.004 | 0.154 | |
| getIdMapList.JointIdMap | 0.112 | 0.000 | 0.111 | |
| getMapNames.JointIdMap | 0.076 | 0.000 | 0.077 | |
| getMapNames.JointUniquePairs | 0.000 | 0.000 | 0.002 | |
| getMatch.UniquePairs | 0.084 | 0.000 | 0.081 | |
| getMatchInfo.JointIdMap | 0.088 | 0.000 | 0.089 | |
| getMatchInfo.JointUniquePairs | 0.56 | 0.00 | 0.56 | |
| getMixture.JointUniquePairs | 0.228 | 0.000 | 0.227 | |
| getSampleNames.CorrData | 0.004 | 0.000 | 0.002 | |
| getStats.IdMapCounts | 0.276 | 0.000 | 0.274 | |
| getStats.Mixture | 0.004 | 0.000 | 0.003 | |
| getUnionIdMap.JointIdMap | 0.652 | 0.000 | 0.653 | |
| getUniquePairs.Corr | 0.000 | 0.004 | 0.005 | |
| getUniquePairs.CorrData | 0.004 | 0.000 | 0.005 | |
| getUniquePairs.JointUniquePairs | 0.004 | 0.000 | 0.005 | |
| interactive.corr.boxplot.JointUniquePairs | 0.096 | 0.000 | 0.096 | |
| interactive.corr.plot.JointUniquePairs | 0.072 | 0.008 | 0.082 | |
| interactive.mixture.boxplot.JointUniquePairs | 0.304 | 0.004 | 0.308 | |
| interactive.mixture.plot.JointUniquePairs | 0.408 | 0.000 | 0.408 | |
| interactive.plot.CorrData | 0.048 | 0.000 | 0.050 | |
| interactive.plot.JointUniquePairs | 0 | 0 | 0 | |
| interleave.Misc | 0 | 0 | 0 | |
| line.loess.Display | 0 | 0 | 0 | |
| line.unsorted.Display | 0 | 0 | 0 | |
| log10.DataFilter | 0.028 | 0.004 | 0.033 | |
| merge.IdMap | 0.896 | 0.000 | 0.893 | |
| minAvgCountConstraint.DataFilter | 0.216 | 0.000 | 0.215 | |
| minCountConstraint.DataFilter | 0.340 | 0.000 | 0.342 | |
| minCountGroupConstraint.DataFilter | 0.376 | 0.000 | 0.375 | |
| mixture.boxplot.JointUniquePairs | 0.272 | 0.000 | 0.270 | |
| mixture.plot.JointUniquePairs | 0.228 | 0.000 | 0.228 | |
| plot.Bootstrap | 0.084 | 0.000 | 0.084 | |
| plot.Corr | 0.072 | 0.000 | 0.070 | |
| plot.CorrData | 0.032 | 0.004 | 0.036 | |
| plot.IdMapCounts | 0.268 | 0.000 | 0.271 | |
| plot.IdMapDiffCounts | 0.801 | 0.000 | 0.800 | |
| plot.Mixture | 0.024 | 0.000 | 0.024 | |
| primaryIDs.IdMapBase | 0.004 | 0.000 | 0.003 | |
| primaryKey.CorrData | 0.000 | 0.000 | 0.001 | |
| primaryKey.IdMapBase | 0.004 | 0.000 | 0.002 | |
| primaryKey.Mixture | 0 | 0 | 0 | |
| progressMsg.Display | 0.004 | 0.000 | 0.000 | |
| removeNASeries.DataFilter | 0.396 | 0.004 | 0.400 | |
| secondaryKey.CorrData | 0.000 | 0.000 | 0.001 | |
| secondaryKey.IdMapBase | 0.004 | 0.000 | 0.003 | |
| secondaryKey.Mixture | 0.000 | 0.000 | 0.001 | |
| subsetCorr.JointUniquePairs | 0.024 | 0.000 | 0.022 | |
| subsetData.JointUniquePairs | 0.008 | 0.000 | 0.008 | |
| subsetGroups.JointUniquePairs | 0.780 | 0.000 | 0.778 | |
| summary.IdMapDiffCounts | 0.480 | 0.000 | 0.477 | |
| swapKeys.IdMap | 0.092 | 0.000 | 0.094 | |
| swapKeys.UniquePairs | 0.024 | 0.000 | 0.023 | |
| textBoundingBox.Display | 0 | 0 | 0 | |
| to.base.Misc | 0.000 | 0.000 | 0.001 | |
| to.binary.logical.Misc | 0.004 | 0.000 | 0.001 | |
| to.index.expr.Misc | 0 | 0 | 0 | |
| unique.UniquePairs | 0.108 | 0.000 | 0.109 | |
| words.Misc | 0.000 | 0.000 | 0.001 | |
| zoom.pars.Display | 0 | 0 | 0 | |