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Package 144/609HostnameOS / ArchBUILDCHECKBUILD BIN
CRImage 1.6.1
Henrik Failmezger
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/CRImage
Last Changed Rev: 73945 / Revision: 74773
Last Changed Date: 2013-03-05 14:31:34 -0800 (Tue, 05 Mar 2013)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: CRImage
Version: 1.6.1
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch CRImage_1.6.1.tar.gz
StartedAt: 2013-03-24 23:10:37 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 23:12:58 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 140.6 seconds
RetCode: 0
Status:  OK 
CheckDir: CRImage.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/CRImage.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'CRImage/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CRImage' version '1.6.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'CRImage' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.7Mb
  sub-directories of 1Mb or more:
    doc       2.2Mb
    extdata   5.4Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
calculateCellularity   9.469  4.895  15.004
classifyCells          7.527  4.399  12.491
convertRGBToHSV        8.633  0.690   9.442
createBinaryImage      4.256  3.075   8.111
colorCorrection        3.119  2.960   6.348
calculateMeanStdTarget 2.850  3.160   6.405
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/CRImage.Rcheck/00check.log'
for details.

CRImage.Rcheck/00install.out:

* installing *source* package 'CRImage' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'CRImage.Rnw' 
** testing if installed package can be loaded

* DONE (CRImage)

CRImage.Rcheck/CRImage-Ex.timings:

nameusersystemelapsed
CRImage-package0.2990.0370.425
SauvolaThreshold1.5260.6172.183
calculateCellularity 9.469 4.89515.004
calculateMeanStdTarget2.8503.1606.405
calculateOtsu0.5570.6151.249
classifyCells 7.527 4.39912.491
colorCorrection3.1192.9606.348
convertHSVToRGB1.1040.8001.973
convertLABToRGB1.1920.9402.200
convertRGBToHSV8.6330.6909.442
convertRGBToLAB1.1630.9392.447
correctCopyNumber0.1310.0040.138
createBinaryImage4.2563.0758.111
createClassifier0.1340.0110.149
labelCells0.0010.0000.000
plotCorrectedCN0.1400.0130.163
processAperio0.0210.0050.036
segmentImage000