CNAnorm 1.4.0
Stefano Berri
| Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/CNAnorm | | Last Changed Rev: 70050 / Revision: 74773 | | Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| perceval | Mac OS X Leopard (10.5.8) / i386 | OK | [ OK ] | OK |
* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/CNAnorm.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'CNAnorm/DESCRIPTION' ... OK
* this is package 'CNAnorm' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'CNAnorm' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
peakPloidy 31.811 7.184 41.214
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
* installing *source* package 'CNAnorm' ...
** libs
*** arch - i386
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c daxpy.f -o daxpy.o
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c ddot.f -o ddot.o
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c dgbfa.f -o dgbfa.o
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c dgbsl.f -o dgbsl.o
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c dscal.f -o dscal.o
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c dsmooth.f -o dsmooth.o
Warning: Nonconforming tab character in column 1 of line 14
Warning: Nonconforming tab character in column 1 of line 15
Warning: Nonconforming tab character in column 1 of line 16
Warning: Nonconforming tab character in column 1 of line 17
Warning: Nonconforming tab character in column 1 of line 18
Warning: Nonconforming tab character in column 1 of line 19
Warning: Nonconforming tab character in column 1 of line 20
Warning: Nonconforming tab character in column 1 of line 21
Warning: Nonconforming tab character in column 1 of line 22
Warning: Nonconforming tab character in column 1 of line 23
Warning: Nonconforming tab character in column 1 of line 24
Warning: Nonconforming tab character in column 1 of line 25
Warning: Nonconforming tab character in column 1 of line 26
Warning: Nonconforming tab character in column 1 of line 27
Warning: Nonconforming tab character in column 1 of line 28
Warning: Nonconforming tab character in column 1 of line 29
Warning: Nonconforming tab character in column 1 of line 30
Warning: Nonconforming tab character in column 1 of line 31
Warning: Nonconforming tab character in column 1 of line 32
Warning: Nonconforming tab character in column 1 of line 33
Warning: Nonconforming tab character in column 1 of line 34
Warning: Nonconforming tab character in column 1 of line 35
Warning: Nonconforming tab character in column 1 of line 36
Warning: Nonconforming tab character in column 1 of line 37
Warning: Nonconforming tab character in column 1 of line 38
Warning: Nonconforming tab character in column 1 of line 39
Warning: Nonconforming tab character in column 1 of line 40
Warning: Nonconforming tab character in column 1 of line 41
Warning: Nonconforming tab character in column 1 of line 42
Warning: Nonconforming tab character in column 1 of line 43
Warning: Nonconforming tab character in column 1 of line 44
Warning: Nonconforming tab character in column 1 of line 45
Warning: Nonconforming tab character in column 1 of line 46
Warning: Nonconforming tab character in column 1 of line 47
Warning: Nonconforming tab character in column 1 of line 48
Warning: Nonconforming tab character in column 1 of line 50
Warning: Nonconforming tab character in column 1 of line 51
Warning: Nonconforming tab character in column 1 of line 52
Warning: Nonconforming tab character in column 1 of line 53
Warning: Nonconforming tab character in column 1 of line 54
Warning: Nonconforming tab character in column 1 of line 55
Warning: Nonconforming tab character in column 1 of line 56
Warning: Nonconforming tab character in column 1 of line 57
Warning: Nonconforming tab character in column 1 of line 58
Warning: Nonconforming tab character in column 1 of line 59
Warning: Nonconforming tab character in column 1 of line 60
Warning: Nonconforming tab character in column 1 of line 61
Warning: Nonconforming tab character in column 1 of line 62
Warning: Nonconforming tab character in column 1 of line 63
Warning: Nonconforming tab character in column 1 of line 64
Warning: Nonconforming tab character in column 1 of line 65
Warning: Nonconforming tab character in column 1 of line 66
Warning: Nonconforming tab character in column 1 of line 67
Warning: Nonconforming tab character in column 1 of line 68
Warning: Nonconforming tab character in column 1 of line 69
Warning: Nonconforming tab character in column 1 of line 70
Warning: Nonconforming tab character in column 1 of line 71
Warning: Nonconforming tab character in column 1 of line 72
Warning: Nonconforming tab character in column 1 of line 73
Warning: Nonconforming tab character in column 1 of line 74
Warning: Nonconforming tab character in column 1 of line 75
Warning: Nonconforming tab character in column 1 of line 76
Warning: Nonconforming tab character in column 1 of line 77
Warning: Nonconforming tab character in column 1 of line 78
Warning: Nonconforming tab character in column 1 of line 79
Warning: Nonconforming tab character in column 1 of line 80
Warning: Nonconforming tab character in column 1 of line 81
Warning: Nonconforming tab character in column 1 of line 82
Warning: Nonconforming tab character in column 1 of line 83
Warning: Nonconforming tab character in column 1 of line 84
Warning: Nonconforming tab character in column 1 of line 85
Warning: Nonconforming tab character in column 1 of line 87
Warning: Nonconforming tab character in column 1 of line 88
Warning: Nonconforming tab character in column 1 of line 89
Warning: Nonconforming tab character in column 1 of line 90
Warning: Nonconforming tab character in column 1 of line 91
Warning: Nonconforming tab character in column 1 of line 92
Warning: Nonconforming tab character in column 1 of line 93
Warning: Nonconforming tab character in column 1 of line 94
Warning: Nonconforming tab character in column 1 of line 95
Warning: Nonconforming tab character in column 1 of line 96
dsmooth.f:62.21:
do 10 i=1,n-1
1
Warning: Nonconforming tab character at (1)
dsmooth.f: In function 'amed3':
dsmooth.f:50: warning: '__result_amed3' may be used uninitialized in this function
gfortran -arch i386 -fPIC -g -O2 -Wall -pedantic -c idamax.f -o idamax.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o CNAnorm.so daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/CNAnorm.Rcheck/CNAnorm/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'CNAnorm.Snw'
** testing if installed package can be loaded
* DONE (CNAnorm)