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Package 123/609HostnameOS / ArchBUILDCHECKBUILD BIN
CNAnorm 1.4.0
Stefano Berri
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/CNAnorm
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: CNAnorm
Version: 1.4.0
Command: rm -rf CNAnorm.buildbin-libdir && mkdir CNAnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNAnorm_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CNAnorm.buildbin-libdir
StartedAt: 2013-03-25 01:49:48 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 01:49:55 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 6.6 seconds
RetCode: 0
Status:  OK 
PackageFile: CNAnorm_1.4.0.tgz
PackageFileSize: 671.1 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CNAnorm.buildbin-libdir CNAnorm_1.4.0.tar.gz'
>>>>>>> 

* installing *source* package 'CNAnorm' ...
** libs
*** arch - i386
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c daxpy.f -o daxpy.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c ddot.f -o ddot.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c dgbfa.f -o dgbfa.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c dgbsl.f -o dgbsl.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c dscal.f -o dscal.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c dsmooth.f -o dsmooth.o
Warning: Nonconforming tab character in column 1 of line 14
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dsmooth.f:62.21:

       do 10 i=1,n-1                                                    
                    1
Warning: Nonconforming tab character at (1)
dsmooth.f: In function 'amed3':
dsmooth.f:50: warning: '__result_amed3' may be used uninitialized in this function
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c idamax.f -o idamax.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o CNAnorm.so daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/CNAnorm.buildbin-libdir/CNAnorm/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'CNAnorm.Snw' 
** testing if installed package can be loaded

* DONE (CNAnorm)


>>>>>>> 
>>>>>>> FIXING LINKS FOR CNAnorm.buildbin-libdir/CNAnorm/libs/i386/CNAnorm.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs/i386/CNAnorm.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs/i386/CNAnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs/i386/CNAnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs/i386/CNAnorm.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=CNAnorm.buildbin-libdir --libs-only CNAnorm_1.4.0.tar.gz'
>>>>>>> 

* installing *source* package 'CNAnorm' ...
** libs
*** arch - x86_64
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c daxpy.f -o daxpy.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c ddot.f -o ddot.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c dgbfa.f -o dgbfa.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c dgbsl.f -o dgbsl.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c dscal.f -o dscal.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c dsmooth.f -o dsmooth.o
Warning: Nonconforming tab character in column 1 of line 14
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dsmooth.f:62.21:

       do 10 i=1,n-1                                                    
                    1
Warning: Nonconforming tab character at (1)
dsmooth.f: In function 'amed3':
dsmooth.f:50: warning: '__result_amed3' may be used uninitialized in this function
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c idamax.f -o idamax.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o CNAnorm.so daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/CNAnorm.buildbin-libdir/CNAnorm/libs/x86_64

* DONE (CNAnorm)


>>>>>>> 
>>>>>>> FIXING LINKS FOR CNAnorm.buildbin-libdir/CNAnorm/libs/x86_64/CNAnorm.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs/x86_64/CNAnorm.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs/x86_64/CNAnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs/x86_64/CNAnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "CNAnorm.buildbin-libdir/CNAnorm/libs/x86_64/CNAnorm.so"