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miRNATarget 0.99.1
Y-h. Taguchi
Snapshot Date: 2012-09-23 10:15:26 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/miRNATarget
Last Changed Rev: 2065 / Revision: 2159
Last Changed Date: 2012-05-11 14:31:35 -0700 (Fri, 11 May 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: miRNATarget
Version: 0.99.1
Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_0.99.1.tar.gz
StartedAt: 2012-09-23 13:29:03 -0700 (Sun, 23 Sep 2012)
EndedAt: 2012-09-23 13:29:59 -0700 (Sun, 23 Sep 2012)
EllapsedTime: 55.6 seconds
RetCode: 0
Status:  OK 
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.10-data-experiment/meat/miRNATarget.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘0.99.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 23.1Mb
  sub-directories of 1Mb or more:
    data  22.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.10-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.

miRNATarget.Rcheck/00install.out:

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘miRNATarget.Rnw’ 
** testing if installed package can be loaded

* DONE (miRNATarget)

miRNATarget.Rcheck/miRNATarget-Ex.timings:

nameusersystemelapsed
HS_conv_id0.0200.0000.021
HS_refseq_to_affy_hc_g1100.0080.0000.008
HS_refseq_to_affy_hg_focus0.0320.0000.030
HS_refseq_to_affy_hg_u133_plus_20.1000.0000.102
HS_refseq_to_affy_hg_u133a0.0640.0000.065
HS_refseq_to_affy_hg_u133a_20.0800.0000.079
HS_refseq_to_affy_hg_u133b0.0360.0000.035
HS_refseq_to_affy_hg_u95a0.040.000.04
HS_refseq_to_affy_hg_u95av20.0360.0040.038
HS_refseq_to_affy_hg_u95b0.0240.0000.023
HS_refseq_to_affy_hg_u95c0.0200.0000.019
HS_refseq_to_affy_hg_u95d0.0120.0000.011
HS_refseq_to_affy_hg_u95e0.0160.0000.017
HS_refseq_to_affy_huex_1_0_st_v22.4560.0562.511
HS_refseq_to_affy_hugene_1_0_st_v10.0800.0000.079
HS_refseq_to_affy_hugenefl0.0280.0000.025
HS_refseq_to_affy_u133_x3p0.3400.0040.346
HS_refseq_to_agilent_cgh_44b0.020.000.02
HS_refseq_to_agilent_wholegenome0.0720.0000.073
HS_refseq_to_canonical_transcript_stable_id0.0600.0080.068
HS_refseq_to_ccds0.0520.0000.053
HS_refseq_to_codelink0.0560.0040.061
HS_refseq_to_embl0.3280.0080.336
HS_refseq_to_ensembl_gene_id0.0640.0080.073
HS_refseq_to_ensembl_peptide_id0.0880.0040.091
HS_refseq_to_ensembl_transcript_id0.0960.0000.100
HS_refseq_to_entrezgene0.0680.0040.068
HS_refseq_to_hgnc_id0.0640.0000.066
HS_refseq_to_hgnc_symbol0.0640.0040.070
HS_refseq_to_hgnc_transcript_name0.0960.0040.097
HS_refseq_to_illumina_humanht_120.0880.0040.090
HS_refseq_to_illumina_humanwg_6_v10.0720.0040.075
HS_refseq_to_illumina_humanwg_6_v20.0680.0040.071
HS_refseq_to_illumina_humanwg_6_v30.0840.0000.085
HS_refseq_to_interpro0.2600.0040.262
HS_refseq_to_ipi0.1240.0000.122
HS_refseq_to_merops0.0080.0000.007
HS_refseq_to_pdb0.0400.0040.044
HS_refseq_to_pfam0.0680.0040.072
HS_refseq_to_phalanx_onearray0.0680.0040.074
HS_refseq_to_protein_id0.3200.0080.326
HS_refseq_to_refseq_dna0.0680.0000.068
HS_refseq_to_refseq_genomic0.0040.0000.002
HS_refseq_to_refseq_peptide0.0920.0000.092
HS_refseq_to_rfam0.0040.0000.005
HS_refseq_to_rfam_gene_name0.0040.0000.001
HS_refseq_to_rfam_transcript_name0.0040.0000.002
HS_refseq_to_smart0.0480.0000.051
HS_refseq_to_tigrfam0.0040.0000.006
HS_refseq_to_ucsc0.0800.0120.089
HS_refseq_to_unigene0.2400.0000.239
HS_refseq_to_uniprot_genename0.0960.0000.098
HS_refseq_to_wikigene_name0.0680.0000.069
MM_conv_id0.0040.0000.005
MM_refseq_to_affy_mg_u74a0.0240.0040.029
MM_refseq_to_affy_mg_u74av20.0240.0040.029
MM_refseq_to_affy_mg_u74b0.0200.0000.023
MM_refseq_to_affy_mg_u74bv20.0240.0000.023
MM_refseq_to_affy_mg_u74c0.0080.0000.008
MM_refseq_to_affy_mg_u74cv20.0080.0000.010
MM_refseq_to_affy_moe430a0.0560.0000.056
MM_refseq_to_affy_moe430b0.2760.0000.279
MM_refseq_to_affy_moex_1_0_st_v11.0960.0161.113
MM_refseq_to_affy_mogene_1_0_st_v10.0680.0000.066
MM_refseq_to_affy_mouse430_20.0720.0000.073
MM_refseq_to_affy_mouse430a_20.0480.0000.050
MM_refseq_to_affy_mu11ksuba0.0200.0000.018
MM_refseq_to_affy_mu11ksubb0.0120.0000.012
MM_refseq_to_agilent_wholegenome0.0640.0000.061
MM_refseq_to_canonical_transcript_stable_id0.0560.0040.061
MM_refseq_to_ccds0.0480.0000.048
MM_refseq_to_codelink0.0480.0000.049
MM_refseq_to_embl0.2760.0080.284
MM_refseq_to_ensembl_gene_id0.0520.0040.058
MM_refseq_to_ensembl_peptide_id0.0600.0000.058
MM_refseq_to_ensembl_transcript_id0.2120.0000.212
MM_refseq_to_entrezgene0.0560.0000.057
MM_refseq_to_fantom0.0760.0000.078
MM_refseq_to_illumina_mousewg_6_v10.0760.0000.074
MM_refseq_to_illumina_mousewg_6_v20.080.000.08
MM_refseq_to_interpro0.1080.0040.115
MM_refseq_to_ipi0.2800.0000.282
MM_refseq_to_merops0.0040.0040.006
MM_refseq_to_mgi_id0.0560.0000.055
MM_refseq_to_mgi_symbol0.0560.0000.056
MM_refseq_to_mgi_transcript_name0.0600.0000.059
MM_refseq_to_pdb0.0080.0000.006
MM_refseq_to_pfam0.0560.0000.056
MM_refseq_to_phalanx_onearray0.0480.0040.050
MM_refseq_to_protein_id0.1880.0040.193
MM_refseq_to_refseq_dna0.0480.0000.048
MM_refseq_to_refseq_peptide0.0600.0000.063
MM_refseq_to_rfam0.0040.0000.002
MM_refseq_to_rfam_gene_name0.0000.0000.002
MM_refseq_to_rfam_transcript_name0.0000.0040.002
MM_refseq_to_smart0.0360.0000.036
MM_refseq_to_tigrfam0.0040.0000.005
MM_refseq_to_ucsc0.0520.0000.050
MM_refseq_to_unigene0.0760.0000.075
MM_refseq_to_uniprot_genename0.0760.0000.073
MM_refseq_to_wikigene_name0.0560.0000.057
TBL21.8200.1161.933
TBL2_HS3.4490.2043.652
TBL2_MM1.5640.1641.727
conv_id0.0040.0000.005
id_conv0.0520.0040.052