Package: hgu2beta7

Version: 1.2.6

Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings hgu2beta7_1.2.6.tar.gz

StartedAt: 2012-09-23 13:12:33 -0700 (Sun, 23 Sep 2012)

EndedAt: 2012-09-23 13:13:24 -0700 (Sun, 23 Sep 2012)

EllapsedTime: 51.3 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: hgu2beta7.Rcheck

Warnings: 3

* using log directory ‘/loc/home/biocbuild/bbs-2.10-data-experiment/meat/hgu2beta7.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hgu2beta7/DESCRIPTION’ ... OK
* this is package ‘hgu2beta7’ version ‘1.2.6’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘hgu2beta7’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.0Mb
  sub-directories of 1Mb or more:
    data   6.9Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory ‘data’ contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
‘library’ or ‘require’ call not declared from: ‘annotate’
* checking contents of ‘data’ directory ... WARNING
Files not of a type allowed in a ‘data’ directory:
  ‘Rdata.rdb’ ‘Rdata.rds’ ‘Rdata.rdx’
Please use e.g. ‘inst/extdata’ for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There were 3 warnings.
NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.10-data-experiment/meat/hgu2beta7.Rcheck/00check.log’
for details.

* installing *source* package ‘hgu2beta7’ ...
** R
** data
**  moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (hgu2beta7)

name	user	system	elapsed
hgu2beta7ACCNUM	0.492	0.028	0.517
hgu2beta7CHR	0.176	0.000	0.176
hgu2beta7CHRLENGTHS	0.000	0.000	0.001
hgu2beta7CHRLOC	0.384	0.004	0.389
hgu2beta7ENZYME	0.160	0.004	0.163
hgu2beta7ENZYME2PROBE	0.008	0.000	0.006
hgu2beta7GENENAME	0.336	0.000	0.336
hgu2beta7GO	2.776	0.056	2.833
hgu2beta7GO2ALLPROBES	0.576	0.016	0.591
hgu2beta7GO2PROBE	0.336	0.000	0.337
hgu2beta7GRIF	0.128	0.000	0.128
hgu2beta7LOCUSID	0.144	0.004	0.150
hgu2beta7MAP	0.152	0.000	0.149
hgu2beta7OMIM	0.152	0.000	0.154
hgu2beta7ORGANISM	0	0	0
hgu2beta7PATH	0.148	0.000	0.151
hgu2beta7PATH2PROBE	0.004	0.000	0.004
hgu2beta7PMID	0.244	0.008	0.251
hgu2beta7PMID2PROBE	1.872	0.000	1.870
hgu2beta7REFSEQ	0.812	0.016	0.829
hgu2beta7SUMFUNC	0.304	0.004	0.311
hgu2beta7SYMBOL	0.78	0.00	0.78
hgu2beta7UNIGENE	0.264	0.000	0.264