Package: SpikeInSubset

Version: 1.2.11

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch SpikeInSubset_1.2.11.tar.gz

StartedAt: 2012-09-23 13:00:14 -0700 (Sun, 23 Sep 2012)

EndedAt: 2012-09-23 13:03:20 -0700 (Sun, 23 Sep 2012)

EllapsedTime: 186.6 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: SpikeInSubset.Rcheck

Warnings: 3

* using log directory '/Users/biocbuild/bbs-2.10-data-experiment/meat/SpikeInSubset.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'SpikeInSubset/DESCRIPTION' ... OK
* this is package 'SpikeInSubset' version '1.2.11'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'SpikeInSubset' can be installed ... WARNING
Found the following significant warnings:
  Warning: /Users/biocbuild/bbs-2.10-data-experiment/meat/SpikeInSubset.Rcheck/00_pkg_src/SpikeInSubset/man/xhyb.Rd: docType 'instance' is unrecognized
See '/Users/biocbuild/bbs-2.10-data-experiment/meat/SpikeInSubset.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
  installed size is 20.5Mb
  sub-directories of 1Mb or more:
    data  20.4Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
prepare_Rd: xhyb.Rd: docType 'instance' is unrecognized
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                           old_size new_size compress
  hgu133a.spikein.xhyb.rda     12Kb      2Kb     gzip
  mas133.rda                  2.2Mb    990Kb       xz
  mas95.rda                   1.3Mb    574Kb       xz
  rma133.rda                  2.2Mb    895Kb       xz
  rma95.rda                   1.3Mb    522Kb       xz
  spikein133.rda              7.3Mb    4.3Mb       xz
  spikein95.rda               6.1Mb    3.6Mb       xz
* checking examples ... NONE
* checking PDF version of manual ... OK

WARNING: There were 3 warnings.
NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.10-data-experiment/meat/SpikeInSubset.Rcheck/00check.log'
for details.

* installing *source* package 'SpikeInSubset' ...
** R
** data
** preparing package for lazy loading
** help
Warning: /Users/biocbuild/bbs-2.10-data-experiment/meat/SpikeInSubset.Rcheck/00_pkg_src/SpikeInSubset/man/xhyb.Rd: docType 'instance' is unrecognized
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (SpikeInSubset)