Package: MAQCsubset

Version: 1.0.25

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch MAQCsubset_1.0.25.tar.gz

StartedAt: 2012-09-23 12:52:19 -0700 (Sun, 23 Sep 2012)

EndedAt: 2012-09-23 12:58:31 -0700 (Sun, 23 Sep 2012)

EllapsedTime: 371.6 seconds

RetCode: 0

Status:  OK

CheckDir: MAQCsubset.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.10-data-experiment/meat/MAQCsubset.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'MAQCsubset/DESCRIPTION' ... OK
* this is package 'MAQCsubset' version '1.0.25'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'MAQCsubset' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 64.7Mb
  sub-directories of 1Mb or more:
    data  64.1Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.10-data-experiment/meat/MAQCsubset.Rcheck/00check.log'
for details.

* installing *source* package 'MAQCsubset' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import 'image' when loading 'graphics'
Warning: replacing previous import 'density' when loading 'stats'
Warning: replacing previous import 'residuals' when loading 'stats'
Creating a generic function for 'lines' from package 'graphics' in package 'MAQCsubset'
** help
*** installing help indices
** building package indices
** installing vignettes
   'maqcNotes.Rnw' 
** testing if installed package can be loaded
Warning: replacing previous import 'image' when loading 'graphics'
Warning: replacing previous import 'density' when loading 'stats'
Warning: replacing previous import 'residuals' when loading 'stats'

* DONE (MAQCsubset)

name	user	system	elapsed
MAQCsubset	1.858	0.062	1.947
gehMAQCsubDef	0.668	0.041	0.903
gnfCerebHi	0.015	0.002	0.093
proboStruct-class	5.756	0.229	6.007
proboscis	3.230	0.136	3.377