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Package 381/553HostnameOS / ArchBUILDCHECKBUILD BIN
ontoCAT 1.8.0
Natalja Kurbatova
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/ontoCAT
Last Changed Rev: 64678 / Revision: 69725
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: ontoCAT
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ontoCAT_1.8.0.tar.gz
StartedAt: 2012-09-24 01:09:04 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 01:29:00 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 1195.8 seconds
RetCode: 0
Status:  OK 
CheckDir: ontoCAT.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.10-bioc/meat/ontoCAT.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ontoCAT/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ontoCAT' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'ontoCAT' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

ontoCAT.Rcheck/00install.out:

* installing *source* package 'ontoCAT' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'ontoCAT.Rnw' 
** testing if installed package can be loaded

* DONE (ontoCAT)

ontoCAT.Rcheck/ontoCAT-Ex.timings:

nameusersystemelapsed
Ontology-class39.169 0.50168.312
OntologyTerm-class0.0230.0000.024
getAccession0.0120.0000.012
getAllTermChildren4.6720.0304.701
getAllTermIds22.621 0.07522.693
getAllTermParents0.1090.0010.110
getAllTerms46.103 0.31546.405
getEFO20.897 0.06120.966
getEFOBranchRootIds9.1810.0149.202
getLabel0.0110.0000.011
getOntology94.725 0.31695.000
getOntologyAccession0.0040.0000.004
getOntologyDescription0.0050.0000.005
getOntologyNoReasoning125.645 0.358125.893
getOntologyRelationNames146.774 0.321147.065
getRootIds8.3300.0118.341
getRoots7.4560.0107.468
getTermAndAllChildren4.6250.0234.646
getTermById0.0120.0000.012
getTermChildren0.1580.0010.160
getTermDefinitions0.0210.0000.020
getTermNameById0.0070.0010.007
getTermParents0.0310.0000.031
getTermRelationNames141.441 0.268141.691
getTermRelations160.153 0.294160.439
getTermSynonyms0.0590.0000.060
hasTerm0.0070.0010.007
isEFOBranchRoot0.0150.0000.015
isRoot7.9240.0117.936
ontoCAT-package0.0030.0010.003
searchTerm6.6720.0106.685
searchTermPrefix6.7270.0106.737
showHierarchyDownToTerm135.712 0.179135.910
showPathsToTerm118.305 0.178118.511