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Package 367/553HostnameOS / ArchBUILDCHECKBUILD BIN
netresponse 1.8.0
Leo Lahti
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/netresponse
Last Changed Rev: 64678 / Revision: 69725
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: netresponse
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch netresponse_1.8.0.tar.gz
StartedAt: 2012-09-24 01:04:19 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 01:08:10 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 230.7 seconds
RetCode: 0
Status:  OK 
CheckDir: netresponse.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.10-bioc/meat/netresponse.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'netresponse/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'netresponse' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'netresponse' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plot.data: no visible global function definition for 'melt'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'ICMg.test.R'
  Running 'test.R'
  Running 'vdpmixture.R'
  Running 'visualization.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.10-bioc/meat/netresponse.Rcheck/00check.log'
for details.

netresponse.Rcheck/00install.out:

* installing *source* package 'netresponse' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c netresponse.c -o netresponse.o
netresponse.c: In function 'mHPpost':
netresponse.c:264: warning: unused variable 'prior_fields'
netresponse.c: In function 'mLogLambda':
netresponse.c:656: warning: 'KsiBeta' may be used uninitialized in this function
netresponse.c:656: warning: 'KsiAlpha' may be used uninitialized in this function
netresponse.c:656: warning: 'BetaKsi' may be used uninitialized in this function
netresponse.c:656: warning: 'AlphaKsi' may be used uninitialized in this function
netresponse.c:655: warning: 'Mutilde' may be used uninitialized in this function
netresponse.c:655: warning: 'Mubar' may be used uninitialized in this function
netresponse.c:655: warning: 'S2mu' may be used uninitialized in this function
netresponse.c:655: warning: 'Mumu' may be used uninitialized in this function
netresponse.c:656: warning: 'U_p' may be used uninitialized in this function
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o netresponse.so netresponse.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.10-bioc/meat/netresponse.Rcheck/netresponse/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'netresponse.Rnw' 
** testing if installed package can be loaded

* DONE (netresponse)

netresponse.Rcheck/netresponse-Ex.timings:

nameusersystemelapsed
ICMg.combined.sampler87.468 0.13687.617
ICMg.links.sampler4.0160.0474.068
NetResponseModel-class0.0010.0010.001
add.ellipse000
detect.responses11.472 0.13711.611
dna0.0330.0030.037
find.similar.features0.7880.0090.797
get.dat000
get.model.parameters0.0080.0020.010
get.qofz000
get.subnets0.0070.0010.008
list.significant.responses000
mixture.densities000
model.stats0.0060.0010.006
netresponse-package6.5460.0866.631
order.responses000
osmo0.0720.0070.078
plot000
plot.associations000
plot.expression000
plot.pca000
plot.response000
plot.responses0.0000.0000.001
plot.scale0.0000.0000.001
plot.subnet0.0000.0000.001
read.network0.0000.0000.001
response.enrichment0.0000.0000.001
response2sample0.0110.0020.014
sample2response0.0010.0000.000
set.breaks0.0010.0000.001
toydata0.0050.0010.006
vdp.mixt0.0930.0030.096
write.netresponse.results000