Package: minfi

Version: 1.2.0

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch minfi_1.2.0.tar.gz

StartedAt: 2012-09-24 00:56:24 -0700 (Mon, 24 Sep 2012)

EndedAt: 2012-09-24 01:03:56 -0700 (Mon, 24 Sep 2012)

EllapsedTime: 452.5 seconds

RetCode: 0

Status:  OK

CheckDir: minfi.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.10-bioc/meat/minfi.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'minfi/DESCRIPTION' ... OK
* this is package 'minfi' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'minfi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'minfi' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'minfi.Rnw' 
** testing if installed package can be loaded

* DONE (minfi)

name	user	system	elapsed
IlluminaMethylationManifest-class	5.617	0.273	6.071
MethylSet-class	0.001	0.000	0.002
RGChannelSet-class	0.001	0.000	0.001
controlStripPlot	5.005	0.270	5.530
densityBeanPlot	14.783	0.783	15.586
densityPlot	8.255	0.883	9.173
detectionP	8.526	0.844	9.420
dmpFinder	2.892	0.314	3.533
getProbeData	0.056	0.005	0.063
logit2	0	0	0
mdsPlot	2.160	0.381	2.565
plotBetasByType	29.549	4.157	33.955
plotCpg	0.206	0.023	0.229
preprocessIllumina	10.103	0.845	10.978
preprocessRaw	6.809	0.450	7.263
preprocessSwan	70.349	9.907	80.946
qcReport	0.091	0.007	0.099
read.450k	9.444	0.902	10.524
read.450k.exp	12.156	1.234	13.552
read.450k.sheet	0.078	0.010	0.104