Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H [I] J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 281/553HostnameOS / ArchBUILDCHECKBUILD BIN
imageHTS 1.6.0
Gregoire Pau
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/imageHTS
Last Changed Rev: 64678 / Revision: 69725
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
petty Mac OS X Leopard (10.5.8) / i386 N O T   S U P P O R T E D

Summary

Package: imageHTS
Version: 1.6.0
Command: E:\biocbld\bbs-2.10-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings imageHTS_1.6.0.tar.gz
StartedAt: 2012-09-24 01:12:51 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 01:17:09 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 257.4 seconds
RetCode: 0
Status:  OK  
CheckDir: imageHTS.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.10-bioc/meat/imageHTS.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'imageHTS/DESCRIPTION' ... OK
* this is package 'imageHTS' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'imageHTS' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
buildCellHTS : <anonymous>: warning in matrix(xtemp[, , ch, drop =
  FALSE], nc = nbReplicates, dimnames = list(Features = 1:nbFeatures,
  Sample = 1:nbReplicates)): partial argument match of 'nc' to 'ncol'
parseDCF: warning in matrix("", nr = length(tt), nc = 2): partial
  argument match of 'nr' to 'nrow'
parseDCF: warning in matrix("", nr = length(tt), nc = 2): partial
  argument match of 'nc' to 'ncol'
segmentATH: warning in rgbImage(r = a, g = t, b = h): partial argument
  match of 'r' to 'red'
segmentATH: warning in rgbImage(r = a, g = t, b = h): partial argument
  match of 'g' to 'green'
segmentATH: warning in rgbImage(r = a, g = t, b = h): partial argument
  match of 'b' to 'blue'
segmentWells: warning in writeImage(frame, file = ff, quality = 95):
  partial argument match of 'file' to 'files'
zprime: warning in matrix(a, nc = 1): partial argument match of 'nc' to
  'ncol'
zprime: warning in matrix(b, nc = 1): partial argument match of 'nc' to
  'ncol'
test.popCellPicker: no visible binding for global variable 'x'
test.popCellPicker: no visible binding for global variable 'access'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: 'MASS'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'E:/biocbld/bbs-2.10-bioc/meat/imageHTS.Rcheck/00check.log'
for details.

imageHTS.Rcheck/00install.out:

* installing *source* package 'imageHTS' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'imageHTS-introduction.Rnw' 
** testing if installed package can be loaded

* DONE (imageHTS)

imageHTS.Rcheck/imageHTS-Ex.timings:

nameusersystemelapsed
collectCellFeatures000
countObjects15.65 1.8714.74
extractFeatures32.54 4.5929.64
fileHTS3.600.016.83
getImageConf1.880.021.89
getUnames4.580.014.60
getWellFeatures4.760.004.76
highlightSegmentation000
installCellPicker2.920.032.95
makeCellHTS000
parseDCF000
parseImageConf1.780.021.79
popCellPicker1.840.001.84
prw2uname000
readLearnTS000
segmentATH000
segmentWells10.32 1.59 9.65
segmentYeastBF5.411.095.54
summarizeWells000
zprime3.880.003.93