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Package 268/553HostnameOS / ArchBUILDCHECKBUILD BIN
htSeqTools 1.2.0
Oscar Reina
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/htSeqTools
Last Changed Rev: 64678 / Revision: 69725
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: htSeqTools
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch htSeqTools_1.2.0.tar.gz
StartedAt: 2012-09-24 00:35:15 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 00:38:15 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 180.7 seconds
RetCode: 0
Status:  OK 
CheckDir: htSeqTools.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.10-bioc/meat/htSeqTools.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'htSeqTools/DESCRIPTION' ... OK
* this is package 'htSeqTools' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'htSeqTools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

htSeqTools.Rcheck/00install.out:

* installing *source* package 'htSeqTools' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'htSeqTools'
Creating a generic function for 'lines' from package 'graphics' in package 'htSeqTools'
** help
*** installing help indices
** building package indices
** installing vignettes
   'htSeqTools.Rnw' 
** testing if installed package can be loaded

* DONE (htSeqTools)

htSeqTools.Rcheck/htSeqTools-Ex.timings:

nameusersystemelapsed
alignPeaks0.3070.0050.312
cmds3.9700.4734.452
cmdsFit-class0.0010.0000.001
cmdsFit000
countHitsWindow0.0570.0020.058
coverageDiff0.1250.0120.138
enrichedChrRegions1.6660.0021.669
enrichedPeaks0.6490.0050.653
enrichedRegions0.2470.0020.249
extendRanges0.1820.0010.183
fdrEnrichedCounts0.1520.0080.160
filterDuplReads0.3840.0070.390
giniCoverage0.5010.0140.515
gridCover-class000
htSample0.3540.0190.372
islandCounts0.2740.0050.279
listOverlap0.0070.0010.008
mergeRegions0.0510.0010.052
plot-methods0.0010.0000.000
plotChrRegions0.0180.0010.019
regionsCoverage0.0000.0000.001
rowLogRegLRT0.0020.0000.002
ssdCoverage0.3950.0040.399
stdPeakLocation0.0850.0020.089