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Package 208/553HostnameOS / ArchBUILDCHECKBUILD BIN
genefu 1.6.1
Benjamin Haibe-Kains , Markus Schroeder
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/genefu
Last Changed Rev: 69375 / Revision: 69725
Last Changed Date: 2012-09-12 10:35:46 -0700 (Wed, 12 Sep 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: genefu
Version: 1.6.1
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch genefu_1.6.1.tar.gz
StartedAt: 2012-09-24 00:12:44 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 00:14:15 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 91.5 seconds
RetCode: 0
Status:  OK 
CheckDir: genefu.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.10-bioc/meat/genefu.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'genefu/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'genefu' version '1.6.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'genefu' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   4.9Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package(s) unavailable to check Rd xrefs: 'multilevel', 'dplR'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  '/Users/biocbuild/bbs-2.10-bioc/meat/genefu.Rcheck/00check.log'
for details.

genefu.Rcheck/00install.out:

* installing *source* package 'genefu' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'genefu.Rnw' 
** testing if installed package can be loaded

* DONE (genefu)

genefu.Rcheck/genefu-Ex.timings:

nameusersystemelapsed
bimod0.4480.0360.489
boxplotplus20.0110.0010.013
compare.proto.cor0.7310.0810.821
compute.pairw.cor.meta1.6620.0801.748
compute.proto.cor.meta0.5500.0690.628
cordiff.dep0.0240.0060.032
expos0.0010.0010.002
fuzzy.ttest0.0020.0010.001
gene700.3370.0230.362
gene760.0810.0060.087
geneid.map0.1540.0170.174
genius0.6450.0480.696
ggi0.1360.0170.158
intrinsic.cluster0.4190.0280.444
intrinsic.cluster.predict0.2650.0140.281
map.datasets0.4320.0780.515
mod10.0020.0010.002
mod20.0010.0000.001
nkis0.0010.0000.002
npi0.0140.0050.018
oncotypedx0.1720.0140.189
pam500.0220.0020.024
pik3cags0.0920.0130.106
ps.cluster0.9070.0240.928
read.m.file0.0690.0080.078
rename.duplicate0.0030.0010.004
rescale0.0650.0120.078
scmgene.robust0.0070.0010.008
scmod1.robust0.0090.0020.011
scmod2.robust0.0090.0010.010
sig.gene700.0080.0010.008
sig.gene760.0090.0010.011
sig.genius0.0140.0080.023
sig.ggi0.0070.0010.008
sig.oncotypedx0.0040.0010.006
sig.pik3cags0.0050.0010.006
sig.score0.1470.0190.170
sig.tamr130.0040.0030.007
ssp20030.0280.0030.031
ssp20060.0300.0020.032
st.gallen0.0080.0030.025
stab.fs0.3510.0150.369
stab.fs.ranking2.7090.0282.743
strescR0.0020.0000.002
subtype.cluster0.8790.0670.957
subtype.cluster.predict0.2040.0270.239
tamr130.0860.0090.097
tbrm000
vdxs0.0010.0010.002
weighted.meanvar0.0000.0000.001
write.m.file0.0020.0010.003