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Package 208/553HostnameOS / ArchBUILDCHECKBUILD BIN
genefu 1.6.1
Benjamin Haibe-Kains , Markus Schroeder
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/genefu
Last Changed Rev: 69375 / Revision: 69725
Last Changed Date: 2012-09-12 10:35:46 -0700 (Wed, 12 Sep 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: genefu
Version: 1.6.1
Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings genefu_1.6.1.tar.gz
StartedAt: 2012-09-24 00:59:11 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 01:00:35 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 84.4 seconds
RetCode: 0
Status:  OK 
CheckDir: genefu.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/genefu.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘genefu/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘genefu’ version ‘1.6.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘genefu’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   4.9Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package(s) unavailable to check Rd xrefs: ‘multilevel’, ‘dplR’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/genefu.Rcheck/00check.log’
for details.

genefu.Rcheck/00install.out:

* installing *source* package ‘genefu’ ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘genefu.Rnw’ 
** testing if installed package can be loaded

* DONE (genefu)

genefu.Rcheck/genefu-Ex.timings:

nameusersystemelapsed
bimod0.4640.0200.486
boxplotplus20.0080.0040.009
compare.proto.cor1.4560.0041.464
compute.pairw.cor.meta1.5560.0121.567
compute.proto.cor.meta0.8080.0040.814
cordiff.dep0.0120.0000.012
expos0.0000.0040.002
fuzzy.ttest0.0000.0000.001
gene700.3080.0000.305
gene760.0520.0000.053
geneid.map0.0960.0040.104
genius0.4040.0080.413
ggi0.0800.0000.078
intrinsic.cluster0.3160.0000.316
intrinsic.cluster.predict0.2240.0080.233
map.datasets1.3360.0041.339
mod10.0040.0000.003
mod20.0000.0000.002
nkis0.0000.0000.003
npi0.0080.0000.006
oncotypedx0.1240.0080.135
pam500.0240.0000.023
pik3cags0.1200.0040.121
ps.cluster1.0080.0081.021
read.m.file0.0600.0040.063
rename.duplicate0.0040.0000.003
rescale0.0360.0040.041
scmgene.robust0.0080.0000.007
scmod1.robust0.0120.0000.012
scmod2.robust0.0040.0040.008
sig.gene700.0040.0000.007
sig.gene760.0040.0000.008
sig.genius0.0200.0040.025
sig.ggi0.0080.0000.008
sig.oncotypedx0.0040.0000.005
sig.pik3cags0.0040.0000.005
sig.score0.1160.0120.128
sig.tamr130.0080.0000.006
ssp20030.0280.0040.030
ssp20060.0240.0040.034
st.gallen0.0120.0000.057
stab.fs0.3360.0000.337
stab.fs.ranking1.6960.0001.701
strescR0.0000.0000.002
subtype.cluster0.8280.0120.838
subtype.cluster.predict0.2560.0000.259
tamr130.0920.0000.091
tbrm0.0000.0000.001
vdxs0.0040.0000.003
weighted.meanvar000
write.m.file0.0040.0000.003