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Package 114/553HostnameOS / ArchBUILDCHECKBUILD BIN
cn.mops 1.2.6
Guenter Klambauer
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/cn.mops
Last Changed Rev: 67018 / Revision: 69725
Last Changed Date: 2012-06-26 00:27:39 -0700 (Tue, 26 Jun 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: cn.mops
Version: 1.2.6
Command: rm -rf cn.mops.buildbin-libdir && mkdir cn.mops.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cn.mops_1.2.6.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R cn.mops.buildbin-libdir
StartedAt: 2012-09-24 02:13:00 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 02:13:26 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 25.9 seconds
RetCode: 0
Status:  OK 
PackageFile: cn.mops_1.2.6.tgz
PackageFileSize: 858.4 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=cn.mops.buildbin-libdir cn.mops_1.2.6.tar.gz'
>>>>>>> 

* installing *source* package 'cn.mops' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c R_init_cnmops.c -o R_init_cnmops.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c cnmops.cpp -o cnmops.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c segment.cpp -o segment.o
segment.cpp: In function 'SEXPREC* segment(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
segment.cpp:65: warning: unused variable 'Rf_beta'
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o cn.mops.so R_init_cnmops.o cnmops.o segment.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.10-bioc/meat/cn.mops.buildbin-libdir/cn.mops/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'cn.mops'
** help
*** installing help indices
** building package indices
** installing vignettes
   'cn.mops.Rnw' 
** testing if installed package can be loaded

* DONE (cn.mops)


>>>>>>> 
>>>>>>> FIXING LINKS FOR cn.mops.buildbin-libdir/cn.mops/libs/i386/cn.mops.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "cn.mops.buildbin-libdir/cn.mops/libs/i386/cn.mops.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "cn.mops.buildbin-libdir/cn.mops/libs/i386/cn.mops.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "cn.mops.buildbin-libdir/cn.mops/libs/i386/cn.mops.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "cn.mops.buildbin-libdir/cn.mops/libs/i386/cn.mops.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=cn.mops.buildbin-libdir --libs-only cn.mops_1.2.6.tar.gz'
>>>>>>> 

* installing *source* package 'cn.mops' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c R_init_cnmops.c -o R_init_cnmops.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c cnmops.cpp -o cnmops.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c segment.cpp -o segment.o
segment.cpp: In function 'SEXPREC* segment(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
segment.cpp:65: warning: unused variable 'Rf_beta'
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o cn.mops.so R_init_cnmops.o cnmops.o segment.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.10-bioc/meat/cn.mops.buildbin-libdir/cn.mops/libs/x86_64

* DONE (cn.mops)


>>>>>>> 
>>>>>>> FIXING LINKS FOR cn.mops.buildbin-libdir/cn.mops/libs/x86_64/cn.mops.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "cn.mops.buildbin-libdir/cn.mops/libs/x86_64/cn.mops.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "cn.mops.buildbin-libdir/cn.mops/libs/x86_64/cn.mops.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "cn.mops.buildbin-libdir/cn.mops/libs/x86_64/cn.mops.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "cn.mops.buildbin-libdir/cn.mops/libs/x86_64/cn.mops.so"