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Package 106/553HostnameOS / ArchBUILDCHECKBUILD BIN
clippda 1.6.0
Stephen Nyangoma
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/clippda
Last Changed Rev: 64678 / Revision: 69725
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: clippda
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch clippda_1.6.0.tar.gz
StartedAt: 2012-09-23 23:42:51 -0700 (Sun, 23 Sep 2012)
EndedAt: 2012-09-23 23:51:33 -0700 (Sun, 23 Sep 2012)
EllapsedTime: 522.5 seconds
RetCode: 0
Status:  OK 
CheckDir: clippda.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.10-bioc/meat/clippda.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'clippda/DESCRIPTION' ... OK
* this is package 'clippda' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'clippda' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

clippda.Rcheck/00install.out:

* installing *source* package 'clippda' ...
** R
** data
** inst
** preparing package for lazy loading
Warning in rgl.init(initValue) : RGL: GLX extension missing on server
Warning in fun(libname, pkgname) : error in rgl_init
** help
*** installing help indices
** building package indices
** installing vignettes
   'clippda.Rnw' 
** testing if installed package can be loaded
Warning in rgl.init(initValue) : RGL: GLX extension missing on server
Warning in fun(libname, pkgname) : error in rgl_init

* DONE (clippda)

clippda.Rcheck/clippda-Ex.timings:

nameusersystemelapsed
ZvaluescasesVcontrolsPlots0.0140.0020.016
ZvaluesfrommultinomPlots1.1950.1371.338
aclinicalProteomicsData-class0.1220.0100.131
aclinicalProteomicsData-methods0.2660.2900.557
betweensampleVariance4.0520.7314.792
checkNo.replicates0.3200.0880.408
clippda-package185.032 25.693212.402
f0.0010.0000.001
fisherInformation0.1270.0110.137
liverRawData0.0100.0010.011
liver_pheno0.0020.0000.002
liverdata5.4391.1166.620
mostSimilarTwo0.0030.0000.003
negativeIntensitiesCorrection1.7630.2291.998
phenoDataFrame0.0700.0080.078
pheno_urine0.0010.0010.003
preProcRepeatedPeakData5.1701.0486.276
proteomicsExprsData0.3170.0520.373
proteomicspData0.0680.0100.078
replicateCorrelations10.304 1.27311.604
sampleClusteredData1.8530.2152.079
sampleSize 97.910 14.062112.448
sampleSize3DscatterPlots0.0280.0030.032
sampleSizeContourPlots0.0500.0020.053
sampleSizeParameters60.824 8.09669.190
sample_technicalVariance13.631 1.64015.308
spectrumFilter5.3541.0526.436
ztwo000